View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14240_low_1 (Length: 556)
Name: NF14240_low_1
Description: NF14240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14240_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 18 - 534
Target Start/End: Original strand, 25193029 - 25193544
Alignment:
| Q |
18 |
tgttatgagtttgaacccagaaactttcattttatacgtttttaagtttaaatctgtgtttatcacttcatcttcgtactaaaatcaaaccgaagaacat |
117 |
Q |
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| T |
25193029 |
tgttatgagtttgaacccagaaactttcattttatgcgttt--aagtttatatcggtgtttatcacttcatcttcgtactaaaatcaaaccgaagaacat |
25193126 |
T |
|
| Q |
118 |
tgtattttcacatgatccatgtgcatgctgcaagtcgttnnnnnnnagtgtgacaacaaattactcaaccgaatggctctagactatttcaaggagaatc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25193127 |
tgtattttcacatgatccatgtgcatgctgcaagtcgttcccccccagtgtgacaacaaattactcaaccgaatggctctagactatttcaaggagaatc |
25193226 |
T |
|
| Q |
218 |
tttatttgttccatttatagacacctagaagnnnnnnnnt-tcatgcaatagatcatgtcggttcttcatattatttgaatcaacacattttaaaatact |
316 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
25193227 |
tttatttgttccatttatagacacctagaagaaaaaaaaaatcatgcaatagatcatgtcggttcttcatattatttgaatcaccacattttaaaatact |
25193326 |
T |
|
| Q |
317 |
tcaattttcaagtgggggaattgtaaccctgtttatactaaaatggaaaagattcgtttggagaaagaacttctattggttactatctttggaaccatgt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25193327 |
tcaattttcaagtgggggaattgtaaccctgtttatactaaaatggaaaagattcgtttggagaaagaacttctattggttactatctttggaaccatgt |
25193426 |
T |
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| Q |
417 |
catagaattataaggcagccatatgaagtgtgtaaatgttttcatatgggaatcaacatttgaaattgcatgaaaagaggaattattactcgaatctttt |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25193427 |
catagaattataaggcagccatatgaagtgtgtaaatgttttcatatgggaatcaacatttgaaattgcataaaaagaggaattattactcgaatctttt |
25193526 |
T |
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| Q |
517 |
cccttgaagttatctcct |
534 |
Q |
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|||||||||||||||||| |
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| T |
25193527 |
cccttgaagttatctcct |
25193544 |
T |
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