View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14240_low_2 (Length: 449)
Name: NF14240_low_2
Description: NF14240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14240_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 66 - 442
Target Start/End: Complemental strand, 31439104 - 31438728
Alignment:
| Q |
66 |
gaagatcaaatactttcattagataacagcagaagcactgacattacataacaagtgagaaatttggtatgggacagtccccacccaatttttagagcca |
165 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31439104 |
gaagatcaaatactttcattagataacagcagaagcactgacattacataacaagtgagaaatttggtatgggacagtccccacccaatttttagagcca |
31439005 |
T |
|
| Q |
166 |
actactttggacatttgaactaactcatgagcaacaaagttttgatttctactaatagcagtaaccttaatatcctcaaacaaatctaaaatagaacaac |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31439004 |
actactttggacatttgaactaactcatgagcaacaaagttttgatttctactaatagcagtaaccttaatatcctcaaacaaatctaaaatagaacaac |
31438905 |
T |
|
| Q |
266 |
aatcttggataattggatcaattgcagccattatagccttgccattgatacaatccacaatagtagcagcatcagactccaccaccaccttatttaatcg |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31438904 |
aatcttggataattggatcaattgcagccattatagccttgccattgatacaatccacaacagtagcagcatcagactccaccaccaccttatttaatcg |
31438805 |
T |
|
| Q |
366 |
caaatcttttgcaactgagagacaccacctcaaaccaagtgcctctgccaacatagaactcaactccacttcttctc |
442 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
31438804 |
caaatcttttgcaactgagagacaccacctcaaaccaagtgcctctgtcaacataggactcaactccacttcttctc |
31438728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 71 - 442
Target Start/End: Complemental strand, 31197270 - 31196902
Alignment:
| Q |
71 |
tcaaatactttcattagataacagcagaagcactgacattacataacaagtgagaaatttggtatgggacagtccccacccaatttttagagccaactac |
170 |
Q |
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|||||||||| |||||||||||| |||| || ||||||| | ||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| |
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| T |
31197270 |
tcaaatacttaaattagataacagtagaaacagaatcattacagagcaagtgagaaatttggtgtgggaaagtgaccacccaatttttagagccaactac |
31197171 |
T |
|
| Q |
171 |
tttggacatttgaactaactcatgagcaacaaagttttgatttctactaatagcagtaaccttaatatcctcaaacaaatctaaaatagaacaacaatct |
270 |
Q |
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| ||||||||||||||||||| ||||| || |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||| ||| |
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| T |
31197170 |
tgtggacatttgaactaactctcgagcatcagagttttgatttctactaatagcagtaacaataatatcctcaaacaaatttaaaatagagcaa---tct |
31197074 |
T |
|
| Q |
271 |
tggataattggatcaattgcagccattatagccttgccattgatacaatccacaatagtagcagcatcagactccaccaccaccttatttaatcgcaaat |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||| ||||| |||| | |
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| T |
31197073 |
tggataattggatcaattgcagccattatagccttgccattgatacaatccacaacagtagcatcatcggactccaccaccaccttgtttaaaggcaagt |
31196974 |
T |
|
| Q |
371 |
cttttgcaactgagagacaccacctcaaaccaagtgcctctgccaacatagaactcaactccacttcttctc |
442 |
Q |
| |
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||||||||||| |||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
31196973 |
cttttgcaactaagagacaccatctcaaaccaagtgcctttgccaacataagactcaactccacttcttctc |
31196902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 5e-57; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 266 - 442
Target Start/End: Original strand, 29250045 - 29250221
Alignment:
| Q |
266 |
aatcttggataattggatcaattgcagccattatagccttgccattgatacaatccacaatagtagcagcatcagactccaccaccaccttatttaatcg |
365 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| || ||| |||| |||||||||||||||| ||||| | |
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| T |
29250045 |
aatcttggataattggatcaactgcagccattatagccttgacattgatacaatccacaacagcagctgcattgaactccaccaccaccttgtttaaaca |
29250144 |
T |
|
| Q |
366 |
caaatcttttgcaactgagagacaccacctcaaaccaagtgcctctgccaacatagaactcaactccacttcttctc |
442 |
Q |
| |
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||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||| ||||||||||||| |
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| T |
29250145 |
caaatattttgcaactgagagacaccatctcaaaccaagtgcctccgccaacataggactcaaatccacttcttctc |
29250221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 122 - 201
Target Start/End: Original strand, 29249962 - 29250041
Alignment:
| Q |
122 |
gagaaatttggtatgggacagtccccacccaatttttagagccaactactttggacatttgaactaactcatgagcaaca |
201 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29249962 |
gagaaatttggtgtgggacattccccacccaatttttagagccaactatgttggacatttgaactaactcatgagcaaca |
29250041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 23458669 - 23458725
Alignment:
| Q |
1 |
ctcactcttttgcaagaataattcagacaacttatttttcaattcagtgttctcttc |
57 |
Q |
| |
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| T |
23458669 |
ctcactcttttgcaagaataattcagacaacttatttttcaattcagcgttctcttc |
23458725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 4e-45; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 121 - 288
Target Start/End: Complemental strand, 28767935 - 28767765
Alignment:
| Q |
121 |
tgagaaatttggtatgggacagtccccacccaatttttagagccaactactttggacatttgaactaactcatgagcaacaaagttttgatttctactaa |
220 |
Q |
| |
|
||||||||||||| ||| || |||||||||||||||| | |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28767935 |
tgagaaatttggtgtggaactttccccacccaattttttgtgccaactattttgggcatttgaactaactcatcagcaacaaagttttgatttctactaa |
28767836 |
T |
|
| Q |
221 |
tagcagtaaccttaatatcctcaaacaaatctaaaatagaaca---acaatcttggataattggatcaatt |
288 |
Q |
| |
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||| ||||| ||| ||||| ||||||||| |||||||||||| |||||||||||||||||||| |||| |
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| T |
28767835 |
tagtagtaatcttcatatcttcaaacaaaattaaaatagaacaacaacaatcttggataattggattaatt |
28767765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 165 - 245
Target Start/End: Complemental strand, 28768310 - 28768230
Alignment:
| Q |
165 |
aactactttggacatttgaactaactcatgagcaacaaagttttgatttctactaatagcagtaaccttaatatcctcaaa |
245 |
Q |
| |
|
||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| |
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|
| T |
28768310 |
aactattttagacatttgaactaacccatgagcaacaaagttttgatttctactaatatgagtaatcttcatatcctcaaa |
28768230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 260 - 325
Target Start/End: Complemental strand, 28768202 - 28768137
Alignment:
| Q |
260 |
aacaacaatcttggataattggatcaattgcagccattatagccttgccattgatacaatccacaa |
325 |
Q |
| |
|
|||||||||||||||||||||||| |||| || |||| ||| ||||||||||||||| |||||| |
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|
| T |
28768202 |
aacaacaatcttggataattggataaattacatccatcgtagatttgccattgatacaaaccacaa |
28768137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 21138446 - 21138412
Alignment:
| Q |
21 |
attcagacaacttatttttcaattcagtgttctct |
55 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
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|
| T |
21138446 |
attcagacaacttatttttcaattcagtgatctct |
21138412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 181
Target Start/End: Complemental strand, 28768483 - 28768423
Alignment:
| Q |
121 |
tgagaaatttggtatgggacagtccccacccaatttttagagccaactactttggacattt |
181 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||| | |||| || ||||||||||| |
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|
| T |
28768483 |
tgagaaatttggtgtgggactttccccacccaattttttcaaccaattattttggacattt |
28768423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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