View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14240_low_3 (Length: 428)

Name: NF14240_low_3
Description: NF14240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14240_low_3
NF14240_low_3
[»] chr1 (3 HSPs)
chr1 (1-413)||(39210058-39210452)
chr1 (290-413)||(24036791-24036918)
chr1 (103-174)||(7673907-7673978)
[»] chr8 (3 HSPs)
chr8 (1-264)||(27510536-27510799)
chr8 (290-413)||(27513624-27513747)
chr8 (331-413)||(8675163-8675245)
[»] chr2 (2 HSPs)
chr2 (300-412)||(38950770-38950885)
chr2 (133-174)||(27592764-27592805)
[»] chr3 (1 HSPs)
chr3 (319-413)||(9461195-9461298)
[»] chr6 (2 HSPs)
chr6 (295-362)||(18331878-18331945)
chr6 (364-413)||(18331979-18332028)
[»] chr4 (2 HSPs)
chr4 (123-261)||(42091774-42091912)
chr4 (80-238)||(31949210-31949368)


Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 39210452 - 39210058
Alignment:
Q  1 aaccatatggtatgaatggattaacgtaagcatgagcactatggttctgcaacaacattctttgtggaggagtgctttgaggatacaccaactcatctcc 100  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39210452 aaccatatggtatgaagggatta-cgtaagcatgagcactatggttctgcaacaacattctttgtggaggagtgctttgaggatacaccaactcatctcc 39210354  T
Q  101 atgcatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagtcgataaaattctttaaaaaatgtc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||| ||||||||    
T  39210353 atgcatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagcacataaaattcttta-aaaatgtc 39210255  T
Q  201 caaccgtcggtaaaatagactttctcgttcctctttttgacagccacctcaaactcattcttgtatacatcaaatggagcatccattataatatatattc 300  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||    
T  39210254 caaccgtcagtaaaatagactttcacgttcctctttttgacagccacctcaaagtcattcttgtatacatcaaatggaacctccattataatatatattc 39210155  T
Q  301 tacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcaggcttgcagata 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||                ||||||||| ||||||||||||||||||||||||||||||    
T  39210154 tacactcacaacattggaatctaatctattcatattcaaattag----------------ttcaaaaaaatcaacctcttcatcatcaggcttgcagata 39210071  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 290 - 413
Target Start/End: Original strand, 24036791 - 24036918
Alignment:
Q  290 aatatatattctacactcacaacattggaatctaatctattcatattcaaa-ttagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatca 388  Q
    ||||||||||||||||||| ||||||| ||||| || |||| |||| |||| |||| ||||||||||||||| | |||||||||||||||||||||||||    
T  24036791 aatatatattctacactcaaaacattgaaatctgatttatttatatacaaatttagatcaaaacaatcaaaact-aaaaaactcaacctcttcatcatca 24036889  T
Q  389 ----ggcttgcagatagtttcatcaactt 413  Q
        |||||||||||||||||||||||||    
T  24036890 ggatggcttgcagatagtttcatcaactt 24036918  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 7673907 - 7673978
Alignment:
Q  103 gcatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaa 174  Q
    ||||||| ||||||||||||||||||| ||||||||||| |||||| |  |||| |||||||||||||||||    
T  7673907 gcatatttctaacttcaaacagaaaaatgtgtcgatttgaaaaaataattgtgacccaagtaccagccaaaa 7673978  T

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Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 27510536 - 27510799
Alignment:
Q  1 aaccatatggtatgaatggattaacgtaagcatgagcactatggttctgcaacaacattctttgtggaggagtgctttgaggatacaccaactcatctcc 100  Q
    |||||||||||||||| | ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27510536 aaccatatggtatgaaggaatttacgtacgcatgagcactatggttctgcaacaacattctttgtggaggagtgctttgaggatacaccaactcatctcc 27510635  T
Q  101 atgcatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagtcga-taaaattctttaaaaaatgt 199  Q
    ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | | ||||||||||| ||||||||    
T  27510636 atgtatattcctaacttcaaacagaaaaaggtgtcgattttcaaaaatgacagtgatccaagtaccagccaaaagcccattaaaattcttt-aaaaatgt 27510734  T
Q  200 ccaaccgtcggtaaaatagactttctcgttcctctttttgacagccacctcaaactcattcttgt 264  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27510735 ccaaccgtcagtaaaatagactttctcgttcctctttttgacagccacctcaaactcattcttgt 27510799  T

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Target: chr8; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 290 - 413
Target Start/End: Original strand, 27513624 - 27513747
Alignment:
Q  290 aatatatattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcag 389  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27513624 aatatatattctacactcacatcattgaaatctaatctattcatattcaaattagttcaaaacactcaaaattcaaaaaactcaacctcttcatcatcag 27513723  T
Q  390 gcttgcagatagtttcatcaactt 413  Q
    |||||||| |||||||||||||||    
T  27513724 gcttgcaggtagtttcatcaactt 27513747  T

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Target: chr8; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 331 - 413
Target Start/End: Complemental strand, 8675245 - 8675163
Alignment:
Q  331 catattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaactt 413  Q
    |||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| ||||||||||    
T  8675245 catattgaaattaggtcaaaacaatcaaaatttaaaaaactcaacctcttcatcatcaggcttgcaaacagtctcatcaactt 8675163  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 300 - 412
Target Start/End: Original strand, 38950770 - 38950885
Alignment:
Q  300 ctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaatt------caaaaaactcaacctcttcatcatcaggctt 393  Q
    ||||||||||||| ||| ||||||||||| ||||||||||||||| |||||||||||||||||       ||||||||||||||||   |||||||||||    
T  38950770 ctacactcacaactttgaaatctaatctaatcatattcaaattaggtcaaaacaatcaaaattaaaaaaaaaaaaactcaacctct---tcatcaggctt 38950866  T
Q  394 gcagatagtttcatcaact 412  Q
    |||||||||||||||||||    
T  38950867 gcagatagtttcatcaact 38950885  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 27592805 - 27592764
Alignment:
Q  133 gtcgatttgcaaaaatgacagtgatccaagtaccagccaaaa 174  Q
    ||||||||||||||||||||||| |||||| |||| ||||||    
T  27592805 gtcgatttgcaaaaatgacagtggtccaagaaccaaccaaaa 27592764  T

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Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 319 - 413
Target Start/End: Complemental strand, 9461298 - 9461195
Alignment:
Q  319 atctaatctattcatattcaaattagttcaaaacaatcaaaattca---------aaaaactcaacctcttcatcatcaggcttgcagatagtttcatca 409  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| |         |||||||||||||||||||||||||||||||||||||||||||||    
T  9461298 atctaatctaatcatattcaaattaggtcaaaacaatcaaaattaacaaaaaaaaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatca 9461199  T
Q  410 actt 413  Q
    ||||    
T  9461198 actt 9461195  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 295 - 362
Target Start/End: Original strand, 18331878 - 18331945
Alignment:
Q  295 atattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaatt 362  Q
    ||||||||||||||||| |||| ||||||||||| ||||||||||||||  |||||||||||||||||    
T  18331878 atattctacactcacaatattgaaatctaatctaatcatattcaaattatgtcaaaacaatcaaaatt 18331945  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 364 - 413
Target Start/End: Original strand, 18331979 - 18332028
Alignment:
Q  364 aaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaactt 413  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18331979 aaaaaactcaacctcttcatcatcaggcttgtagatagtttcatcaactt 18332028  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 123 - 261
Target Start/End: Original strand, 42091774 - 42091912
Alignment:
Q  123 agaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagtc-gataaaattctttaaaaaatgtccaaccgtcggtaaaatagact 221  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||  | |  ||||||||| |||| | | |||||| ||   |||||| |||    
T  42091774 agaaaaaggcgtcgatttgcaaaaatgacagtgatccaagaaccagccaaaatcctgtaaaaattcttcaaaaca-gcccaaccatcatcaaaataaact 42091872  T
Q  222 ttctcgttcctctttttgacagccacctcaaactcattct 261  Q
    ||| ||||||||||||  ||||| ||||||| ||||||||    
T  42091873 ttcccgttcctcttttccacagctacctcaatctcattct 42091912  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 238
Target Start/End: Complemental strand, 31949368 - 31949210
Alignment:
Q  80 aggatacaccaactcatctccatgcatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagtcga 179  Q
    |||||||||||| | | ||||||||| ||| || ||  | | ||||||||| ||||||||||||||||| |  |||||||||| |||| ||||||  | |    
T  31949368 aggatacaccaattaaactccatgcagatttcttaccaccatcagaaaaagatgtcgatttgcaaaaataattgtgatccaagcaccacccaaaatccca 31949269  T
Q  180 -taaaattctttaaaaaatgtccaaccgtcggtaaaatagactttctcgttcctcttttt 238  Q
     ||||  ||||| |||||||||||||| || |||||||| ||  || ||||| |||||||    
T  31949268 ttaaagctcttt-aaaaatgtccaaccatcagtaaaataaaccctcccgttcttcttttt 31949210  T

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