View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14240_low_4 (Length: 366)
Name: NF14240_low_4
Description: NF14240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14240_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 162 - 350
Target Start/End: Original strand, 45348145 - 45348333
Alignment:
| Q |
162 |
ttcttatgctacagcgctgaacagtgtgggcattctacgaaagtcttggggagaccttgttgatgaagaatctgctaattggttagagaatgattttact |
261 |
Q |
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|||||||||| |||| |||||||||||||||||||| | ||||||||| |||||||||| ||||||||||||| ||||| |||||||||||| | ||| |
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| T |
45348145 |
ttcttatgctgcagctctgaacagtgtgggcattctgccaaagtcttgcggagaccttgcggatgaagaatctgataattccttagagaatgatctcact |
45348244 |
T |
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| Q |
262 |
ttccatccaatggagaactcatccatttgtcctgttaaaaatgttcaccacagtaatctgaaggataggaatgctgagatgttggtaac |
350 |
Q |
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| T |
45348245 |
ttccacccaatggagaactcatccatttgtcctgttaaaaatgttcaccacagtaatctgaaggataggaatgctgagatgttggtaac |
45348333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 162 - 350
Target Start/End: Original strand, 45357624 - 45357812
Alignment:
| Q |
162 |
ttcttatgctacagcgctgaacagtgtgggcattctacgaaagtcttggggagaccttgttgatgaagaatctgctaattggttagagaatgattttact |
261 |
Q |
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|||||||||| |||| |||||||||||||||||||| | ||||||||| |||||||||| ||||||||||||| ||||| |||||||||||| | ||| |
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| T |
45357624 |
ttcttatgctgcagctctgaacagtgtgggcattctgccaaagtcttgcggagaccttgcggatgaagaatctgataattccttagagaatgatctcact |
45357723 |
T |
|
| Q |
262 |
ttccatccaatggagaactcatccatttgtcctgttaaaaatgttcaccacagtaatctgaaggataggaatgctgagatgttggtaac |
350 |
Q |
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| T |
45357724 |
ttccacccaatggagaactcatccatttgtcctgttaaaaatgttcaccacagtaatctgaaggataggaatgctgagatgttggtaac |
45357812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 36420531 - 36420582
Alignment:
| Q |
180 |
gaacagtgtgggcattctacgaaagtcttggggagaccttgttgatgaagaa |
231 |
Q |
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| T |
36420531 |
gaacagtgtggccattctgccaaagtcttggggagaccttattgatgaagaa |
36420582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 162 - 350
Target Start/End: Complemental strand, 45119863 - 45119676
Alignment:
| Q |
162 |
ttcttatgctacagcgctgaacagtgtgggcattctacgaaagtcttggggagaccttgttgatgaagaatctgctaattggttagagaatgattttact |
261 |
Q |
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|||||||||| ||| |||||||||||||||||||| | |||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| ||| |
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| T |
45119863 |
ttcttatgctgcagttctgaacagtgtgggcattctgccaaagtcttggggagaccttgctgatgaagaatctgataattccttagagaatgatttcact |
45119764 |
T |
|
| Q |
262 |
ttccatccaatggagaactcatccatttgtcctgttaaaaatgttcaccacagtaatctgaaggataggaatgctgagatgttggtaac |
350 |
Q |
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||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45119763 |
ttccacccaatggagaactcatcca-ttgtcctgttaaaaatgttcaccatagtaatctgaaggataggaatgctgagatgttggtaac |
45119676 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 10 - 157
Target Start/End: Original strand, 40473882 - 40474028
Alignment:
| Q |
10 |
attatactctatagatacactctttgacttatactataaacaaacagttcnnnnnnnncaaaataaaatttaaatctatgtctcatgagagaccttcaaa |
109 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
40473882 |
attataatctatagatacactctttgacttatactataaacaaacagttcttttttt-caaaataaaatttaaatctacgtctcatgagagagcttcaaa |
40473980 |
T |
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| Q |
110 |
actaagtagccattttagttggtcattttaacaaatttactctaacaa |
157 |
Q |
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| T |
40473981 |
actaagtagccattttagttggtcattttaacaaatttactctaacaa |
40474028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 310
Target Start/End: Complemental strand, 36030458 - 36030340
Alignment:
| Q |
192 |
cattctacgaaagtcttggggagaccttgttgatgaagaatctgctaattggttagagaatgattttactttccatccaatggagaactcatccatttgt |
291 |
Q |
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|||||| | ||||| ||||| ||||||| ||||||||||||| | ||| ||| |||| ||| | ||||||| ||||||||||| |||| ||||||| |
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| T |
36030458 |
cattctgccaaagttttgggaagaccttaccgatgaagaatctgatcattccttatagaaggatctctctttccacccaatggagaattcattcatttgt |
36030359 |
T |
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| Q |
292 |
cctgttaaaaatgttcacc |
310 |
Q |
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| T |
36030358 |
cgtgttaaaaatgttcacc |
36030340 |
T |
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