View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14240_low_6 (Length: 285)

Name: NF14240_low_6
Description: NF14240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14240_low_6
NF14240_low_6
[»] chr3 (8 HSPs)
chr3 (1-275)||(53058879-53059155)
chr3 (21-222)||(53062113-53062320)
chr3 (28-214)||(53067876-53068059)
chr3 (28-221)||(37418210-37418400)
chr3 (30-221)||(53341007-53341201)
chr3 (48-142)||(53972116-53972210)
chr3 (59-128)||(23224663-23224732)
chr3 (60-124)||(49857857-49857921)
[»] chr7 (10 HSPs)
chr7 (28-214)||(31013642-31013828)
chr7 (39-135)||(11377380-11377476)
chr7 (36-91)||(11374242-11374297)
chr7 (29-142)||(12646303-12646416)
chr7 (33-135)||(12539862-12539964)
chr7 (48-136)||(47606602-47606690)
chr7 (48-138)||(20001155-20001245)
chr7 (35-135)||(12483384-12483484)
chr7 (35-135)||(12504814-12504914)
chr7 (33-88)||(12623777-12623833)
[»] chr2 (2 HSPs)
chr2 (23-163)||(6687163-6687306)
chr2 (100-156)||(44253247-44253303)
[»] chr8 (2 HSPs)
chr8 (36-135)||(35396089-35396188)
chr8 (63-138)||(5387801-5387876)
[»] chr4 (1 HSPs)
chr4 (51-124)||(56164454-56164527)
[»] chr1 (1 HSPs)
chr1 (19-91)||(15330472-15330544)


Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 53059155 - 53058879
Alignment:
Q  1 tttcgttcatgaaggctgtttggtcgatgaaatcga--gagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtg 98  Q
    |||||||||||||||||||||||||||||||||||   |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53059155 tttcgttcatgaaggctgtttggtcgatgaaatcgttcgagtgaggactgagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtg 53059056  T
Q  99 tctttggttgggagaaaggagagaatgtgacagataattgagtccggaagggagctaaccctgtcacactcttcaattggaatcgatgatgatcgctgct 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53059055 tctttggttgggagaaaggagagaatgtgacagataattgagtccggaagggagctaaccctgtcacactcttcaattggaatcgatgatgatcgctgct 53058956  T
Q  199 tcttcgacttggacatggcagttaataatattattgcctttgcttctc-ctctttgggaaacagaatttggacctttg 275  Q
    ||||||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||||||    
T  53058955 tcttcgacttggacatggcagttaataatattattgcctttg-aactcactctttgggaaacagaatttggacctttg 53058879  T

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Target: chr3; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 21 - 222
Target Start/End: Complemental strand, 53062320 - 53062113
Alignment:
Q  21 tggtcgatgaaatcgagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggaga 120  Q
    |||||| ||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53062320 tggtcggtgaaatcgagagtgaagacatagagccataatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggaga 53062221  T
Q  121 gaatgtgacagat-----aattgagtccggaagggag-ctaaccctgtcacactcttcaattggaatcgatgatgatcgctgcttcttcgacttggacat 214  Q
    |||||||||||||     | ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53062220 gaatgtgacagatagttgagttgagtctggaagggagactaaccctgtcacactcttcaattggaatcgatgatgatcgctgcttcttcgacttggacat 53062121  T
Q  215 ggcagtta 222  Q
    ||||||||    
T  53062120 ggcagtta 53062113  T

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Target: chr3; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 28 - 214
Target Start/End: Complemental strand, 53068059 - 53067876
Alignment:
Q  28 tgaaatcgagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtg 127  Q
    |||||| |||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53068059 tgaaattgagagtgaagactgagagccataatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtg 53067960  T
Q  128 acagataattgagtccggaagggagctaaccctgtcacactcttcaattggaatcgatgatgatcgctgcttcttcgacttggacat 214  Q
    | ||||||| ||||||||||||||||||||| |||  | |||||| |||||||||||   ||||||| |||||||||||||||||||    
T  53067959 atagataatcgagtccggaagggagctaaccttgttgcgctcttctattggaatcga---tgatcgccgcttcttcgacttggacat 53067876  T

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Target: chr3; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 28 - 221
Target Start/End: Complemental strand, 37418400 - 37418210
Alignment:
Q  28 tgaaatcgagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtg 127  Q
    |||||||||| |||| ||| |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  37418400 tgaaatcgagggtgaagactgagagccacaatgggttccacctctttgagaggatgcttgtggcgacagtgtctttggttgggagaaaggagagaatatg 37418301  T
Q  128 acagataattgagtccggaagggagctaaccctgtcacactcttcaattggaatcgatgatgatcgctgcttcttcgacttggacatggcagtt 221  Q
    ||||||||||||||| |||||||||||||||||||| |||| |||  ||||||||    ||||||| |||||||||||||||||||| ||||||    
T  37418300 acagataattgagtctggaagggagctaaccctgtcgcacttttctgttggaatc---catgatcgttgcttcttcgacttggacatcgcagtt 37418210  T

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Target: chr3; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 30 - 221
Target Start/End: Original strand, 53341007 - 53341201
Alignment:
Q  30 aaatcgagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgac 129  Q
    ||||||||||||||||| ||||  || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53341007 aaatcgagagtgaggactgagatacataatggtttccacctctttgagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgac 53341106  T
Q  130 agataattgagtccggaagggagctaaccctg------tcacactcttcaattggaatcgatgatgatcgctgcttcttcgacttggacatggcagtt 221  Q
    ||||||||||||| ||||||||||||||||||      ||||||||||| ||||| |||   ||||||||||||||||| ||||| ||||| ||||||    
T  53341107 agataattgagtctggaagggagctaaccctgtcgtactcacactcttctattggtatc---gatgatcgctgcttcttggactttgacatcgcagtt 53341201  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 142
Target Start/End: Original strand, 53972116 - 53972210
Alignment:
Q  48 gagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagataattgagtc 142  Q
    |||| ||| ||||| ||||||||||| ||||||||| |||||| | ||| |||||||||||| ||||| ||||| |||| | |||||||||||||    
T  53972116 gagatccataatggcttccacctctttgagaggatggttgtgggggcggagtctttggttggaagaaaagagagtatgtaagagataattgagtc 53972210  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 23224663 - 23224732
Alignment:
Q  59 tggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtga 128  Q
    ||||||||| ||||  ||||| ||||||||| || | ||||||||||| || ||| ||||||||||||||    
T  23224663 tggtttccatctctctgagagaatgcttgtgacggctgtgtctttggtgggaagacaggagagaatgtga 23224732  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 49857857 - 49857921
Alignment:
Q  60 ggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaat 124  Q
    |||||||||||||||||||||| | ||||||||  || |||||| |  || ||||||||||||||    
T  49857857 ggtttccacctcttggagaggacggttgtggcggtggcgtctttcgacggaagaaaggagagaat 49857921  T

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Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 28 - 214
Target Start/End: Complemental strand, 31013828 - 31013642
Alignment:
Q  28 tgaaatcgagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtg 127  Q
    ||||||||||||||| ||| |||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31013828 tgaaatcgagagtgaagactgagagccataatggtttccacctctttgaaaggatgcttgtggcgacggtgtctttggttggtagaaaggagagaatgtg 31013729  T
Q  128 acagataattgagtccggaagggagctaaccctgtcacactcttcaattggaatcgatgatgatcgctgcttcttcgacttggacat 214  Q
    |||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||    | | ||||||||||||||||||    
T  31013728 acagataattgagtccggaagggagctatccctgtcgcactcttctattggaatcgatgatcgctgattcttcttcgacttggacat 31013642  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 135
Target Start/End: Complemental strand, 11377476 - 11377380
Alignment:
Q  39 gtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagataa 135  Q
    |||||||| |||||||||||||| ||||| ||||||||||||||||| |||||| | |  |||||||| || ||||| ||||| ||||| |||||||    
T  11377476 gtgaggacggagagccacaatgggttccatctcttggagaggatgctagtggcggcagattctttggtaggaagaaaagagaggatgtggcagataa 11377380  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 11374297 - 11374242
Alignment:
Q  36 agagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggc 91  Q
    ||||||||||| |||||||||||||| ||||| ||||||||||||||||| |||||    
T  11374297 agagtgaggacggagagccacaatgggttccatctcttggagaggatgctagtggc 11374242  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 142
Target Start/End: Complemental strand, 12646416 - 12646303
Alignment:
Q  29 gaaatcgagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtga 128  Q
    ||||| |||||||||||  ||  ||||||| |||||||| || |||||||||||| |||| ||| |||  | || ||| |||||||| |||||||||||     
T  12646416 gaaatggagagtgaggagtgaatgccacaaaggtttccatcttttggagaggatggttgttgcggcggattgttgggtagggagaaatgagagaatgtgg 12646317  T
Q  129 cagataattgagtc 142  Q
    |||||||| |||||    
T  12646316 cagataatggagtc 12646303  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 135
Target Start/End: Complemental strand, 12539964 - 12539862
Alignment:
Q  33 tcgagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacaga 132  Q
    ||||||||||  || ||| |||||||||| ||||| || |||||||| |||||||||||  | |  | |||||| |||||||| ||||||||||| ||||    
T  12539964 tcgagagtgaaaactgagtgccacaatggattccatcttttggagagaatgcttgtggcagcagattgtttggtagggagaaaagagagaatgtggcaga 12539865  T
Q  133 taa 135  Q
    |||    
T  12539864 taa 12539862  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 136
Target Start/End: Original strand, 47606602 - 47606690
Alignment:
Q  48 gagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagataat 136  Q
    |||||||| | ||| ||||| ||||| |||||||||||||| ||  || ||  ||||||||||||||| || ||||||||||| |||||    
T  47606602 gagagccatagtgggttccatctctttgagaggatgcttgtagctgcgctgagtttggttgggagaaaagatagaatgtgacatataat 47606690  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 20001155 - 20001245
Alignment:
Q  48 gagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagataattg 138  Q
    |||||||| | ||||||||| ||||| |||||||||||||||||  | | || ||| || |||||||| || || |||||||| |||||||    
T  20001155 gagagccatattggtttccatctcttagagaggatgcttgtggcagcagagttttttgtcgggagaaaagaaaggatgtgacaaataattg 20001245  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 135
Target Start/End: Complemental strand, 12483484 - 12483384
Alignment:
Q  35 gagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagata 134  Q
    ||||||||  || ||| |||||||||| ||||| || |||||||| |||||||||||  | |  | |||||| |||||||| || |||||||| ||||||    
T  12483484 gagagtgaaaactgagtgccacaatggattccatcttttggagagaatgcttgtggcagcagattgtttggtagggagaaaagaaagaatgtggcagata 12483385  T
Q  135 a 135  Q
    |    
T  12483384 a 12483384  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 135
Target Start/End: Complemental strand, 12504914 - 12504814
Alignment:
Q  35 gagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagata 134  Q
    ||||||||  || ||| |||||||||| ||||| || |||||||| |||||||||||  | |  | |||||| |||||||| || |||||||| ||||||    
T  12504914 gagagtgaaaactgagtgccacaatggattccatcttttggagagaatgcttgtggcagcagattgtttggtagggagaaaagaaagaatgtggcagata 12504815  T
Q  135 a 135  Q
    |    
T  12504814 a 12504814  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 12623777 - 12623833
Alignment:
Q  33 tcgagagtgaggacagagagccacaatgg-tttccacctcttggagaggatgcttgt 88  Q
    ||||||||||| || ||||||||||| || |||||| || |||||||||||||||||    
T  12623777 tcgagagtgagaactgagagccacaacggatttccatcttttggagaggatgcttgt 12623833  T

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Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 163
Target Start/End: Complemental strand, 6687306 - 6687163
Alignment:
Q  23 gtcgatgaaatcgagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacgg---tgtctttggttgggagaaaggag 119  Q
    |||||||||||||||||| | ||| |||||||| ||||||||||| ||||| |||||||||||||||||||| |   ||||||||||||| ||||| |||    
T  6687306 gtcgatgaaatcgagagttaagactgagagccataatggtttccatctcttcgagaggatgcttgtggcgacagtactgtctttggttggaagaaatgag 6687207  T
Q  120 agaatgtgacagataattgagtccggaagggagctaaccctgtc 163  Q
    ||||| ||||| ||||||||||  ||||||||||||||||||||    
T  6687206 agaatatgacaaataattgagtatggaagggagctaaccctgtc 6687163  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 44253303 - 44253247
Alignment:
Q  100 ctttggttgggagaaaggagagaatgtgacagataattgagtccggaagggagctaa 156  Q
    |||||||||| ||||| |||||||||||| | |||||||| || |||| ||||||||    
T  44253303 ctttggttggaagaaaagagagaatgtgagatataattgaatctggaaaggagctaa 44253247  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 135
Target Start/End: Complemental strand, 35396188 - 35396089
Alignment:
Q  36 agagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagataa 135  Q
    ||||||||||| |||||||||||||| ||||| ||||| ||||||||||| |||| | | |  | |||||| |||||||| ||||||||||| |||||||    
T  35396188 agagtgaggacggagagccacaatgggttccatctcttagagaggatgctagtggtggcagattgtttggtagggagaaacgagagaatgtggcagataa 35396089  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 5387801 - 5387876
Alignment:
Q  63 ttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagataattg 138  Q
    ||||||||| | |||||||||||||||| | | |||| |||||| || ||||| ||||||||| |||| |||||||    
T  5387801 ttccacctcgttgagaggatgcttgtggtggccgtgtgtttggtaggaagaaaagagagaatgagacaaataattg 5387876  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 124
Target Start/End: Complemental strand, 56164527 - 56164454
Alignment:
Q  51 agccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaat 124  Q
    ||||| ||||| ||||||  ||| ||||||| |||||||||||| | |||||||||||||||||| ||||||||    
T  56164527 agccataatggattccactgcttcgagaggacgcttgtggcgaccgagtctttggttgggagaaaagagagaat 56164454  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 15330472 - 15330544
Alignment:
Q  19 tttggtcgatgaaatcgagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggc 91  Q
    ||||||||  ||| ||||||||||| || ||  |||||||||| | ||| || ||||||||||||||||||||    
T  15330472 tttggtcgtcgaagtcgagagtgagaactgaatgccacaatgggtaccatcttttggagaggatgcttgtggc 15330544  T

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