View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14241_high_3 (Length: 303)
Name: NF14241_high_3
Description: NF14241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14241_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 22564970 - 22564680
Alignment:
| Q |
1 |
ttggcaacaacaatggaatctccagcatccaaactagttatgagatttccaagttcttcaagtttttgaggatcatgctttccttcgtactcagcagaaa |
100 |
Q |
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|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22564970 |
ttggcaacaacaatagaatctccagcatccaaacttgttatgagatttccaagttcttcaagtttttgaggatcatgctttccttcgtactcagcagaaa |
22564871 |
T |
|
| Q |
101 |
gttcatatacttcttgaaccgtttccttgagatcttcaccgtgtaaatcctgaagaatatcaaggaaacggtccaagagcaaagcatcatactcaaccag |
200 |
Q |
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||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22564870 |
gttcatatacttcttgaactgtttccttgagatcctcaccgtgtaaatcctgaagaatatcaaggaaacggtccaagagcaaagcatcatactcaaccag |
22564771 |
T |
|
| Q |
201 |
tttatcatcctcactcacttttgcaggaaccaattgcctaagctgagcatcgatggatgccatcttttcaagcttcctgttcgcctttgct |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||| ||||| |
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| T |
22564770 |
tttatcatcctcactcacttttgcaggaaccaattgccgaagctgagcatcgatggatgccatcttttcaaggttcctgtttgccattgct |
22564680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 124 - 269
Target Start/End: Complemental strand, 32094223 - 32094078
Alignment:
| Q |
124 |
tccttgagatcttcaccgtgtaaatcctgaagaatatcaaggaaacggtccaagagcaaagcatcatactcaaccagtttatcatcctcactcacttttg |
223 |
Q |
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||||| ||||| || || ||||||||||||||||||||||| || || ||||| | ||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
32094223 |
tccttcagatcctctccatgtaaatcctgaagaatatcaagaaaccgatccaacaacaaagcatcatactcaataagtttatcatcttcactcacttttg |
32094124 |
T |
|
| Q |
224 |
caggaaccaattgcctaagctgagcatcgatggatgccatcttttc |
269 |
Q |
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| T |
32094123 |
caggaaccaattgcctaagctgtgcatcaattgatgccattttttc |
32094078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 32095014 - 32094895
Alignment:
| Q |
1 |
ttggcaacaacaatggaatctccagcatccaaactagttatgagatttccaagttcttcaagtttttgaggatcatgctttccttcgtactcagcagaaa |
100 |
Q |
| |
|
|||||||||||||| || || || ||||| ||||| || || | ||||||||| ||||||||||| | |||||||||||||| ||| || |||||||||| |
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| T |
32095014 |
ttggcaacaacaattgagtcacctgcatcgaaacttgtgatcaaatttccaagctcttcaagtttcttaggatcatgctttctttcatattcagcagaaa |
32094915 |
T |
|
| Q |
101 |
gttcatatacttcttgaacc |
120 |
Q |
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||||||| |||||||||||| |
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| T |
32094914 |
gttcatacacttcttgaacc |
32094895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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