View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14241_high_4 (Length: 250)
Name: NF14241_high_4
Description: NF14241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14241_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 6 - 234
Target Start/End: Original strand, 4250995 - 4251223
Alignment:
| Q |
6 |
agacccaaatggaaataacgtaatggaccttgtatccacattattcccaagtgaaaaaggaaatgatagaagcttaaagattttcccatttgaaccacaa |
105 |
Q |
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| T |
4250995 |
agacccaaatggaaataacgtaatggaccttgtatccacattattcccaagtgaaaaaggaaatgatagaagcttaaagattttcccatttgaaccacaa |
4251094 |
T |
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| Q |
106 |
ctcgaagactctgttcgtgctacttttaagctcaaacatgaagatttggataagataaagcaaagagtgttatctacatgggaaatattcgatacgaaag |
205 |
Q |
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| T |
4251095 |
ctcgaagactctgttcgtgctacttttaagctcaaacatgaagatttggataagataaagcaaagagtgttatctacatgggaaatattcgatacgaaag |
4251194 |
T |
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| Q |
206 |
aatcaaagccacaaactctatcatcattt |
234 |
Q |
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| T |
4251195 |
aatcaaagccacaaactctatcatcattt |
4251223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 51 - 230
Target Start/End: Original strand, 4246605 - 4246784
Alignment:
| Q |
51 |
cccaagtgaaaaaggaaatgatagaagcttaaagattttcccatttgaaccacaactcgaagactctgttcgtgctacttttaagctcaaacatgaagat |
150 |
Q |
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| T |
4246605 |
cccaagtcaaaaaagaaatgaaagaagcttaaagaatttccattttgaaccaaaactcaaagactgtgttcgcgctacttttgaactcaaacacgaagat |
4246704 |
T |
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| Q |
151 |
ttggataagataaagcaaagagtgttatctacatgggaaatattcgatacgaaagaatcaaagccacaaactctatcatc |
230 |
Q |
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| T |
4246705 |
ttggataagataaagcaaagggtgttatcaacatgggaaacattcgatacaagagaatcaaagccacaaaatatatcatc |
4246784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 49 - 208
Target Start/End: Original strand, 4234022 - 4234181
Alignment:
| Q |
49 |
ttcccaagtgaaaaaggaaatgatagaagcttaaagattttcccatttgaaccacaactcgaagactctgttcgtgctacttttaagctcaaacatgaag |
148 |
Q |
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||||||| ||||||||||||||| |||||||| |||||||| || ||||||||| |||||||||||| ||||||| |||| || ||||||| || ||||| |
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| T |
4234022 |
ttcccaaatgaaaaaggaaatgaaagaagcttgaagattttaccttttgaaccaaaactcgaagactatgttcgttctacattcaagctcacacgtgaag |
4234121 |
T |
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| Q |
149 |
atttggataagataaagcaaagagtgttatctacatgggaaatattcgatacgaaagaat |
208 |
Q |
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| T |
4234122 |
atttgaataagataaagcaaatggtattatcaaaatgggaattattggacacgaatgaat |
4234181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 49 - 194
Target Start/End: Original strand, 4196279 - 4196424
Alignment:
| Q |
49 |
ttcccaagtgaaaaaggaaatgatagaagcttaaagattttcccatttgaaccacaactcgaagactctgttcgtgctacttttaagctcaaacatgaag |
148 |
Q |
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| T |
4196279 |
ttcccaaatgaaaaaggaaacgaaagatgcttgaagattttagcttttgaaccaaacctcgaagactctcttcgtgctacgttcaagctcacacgtgaag |
4196378 |
T |
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| Q |
149 |
atttggataagataaagcaaagagtgttatctacatgggaaatatt |
194 |
Q |
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| T |
4196379 |
atttgaacaagataaagcaaatggtgttaacaaaatgggaattatt |
4196424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 189
Target Start/End: Original strand, 4189390 - 4189530
Alignment:
| Q |
49 |
ttcccaagtgaaaaaggaaatgatagaagcttaaagattttcccatttgaaccacaactcgaagactctgttcgtgctacttttaagctcaaacatgaag |
148 |
Q |
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| T |
4189390 |
ttcccaagcgaaaaaggaaacgaacatagcttaaatattttacactttgaaccaaaacttgaagactccgttcgtgccacattcaatctcacgcgtgaag |
4189489 |
T |
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| Q |
149 |
atttggataagataaagcaaagagtgttatctacatgggaa |
189 |
Q |
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| T |
4189490 |
atttgaacaagataaagcaaatggtgttatcaaaatgggaa |
4189530 |
T |
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