View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14241_low_1 (Length: 475)

Name: NF14241_low_1
Description: NF14241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14241_low_1
NF14241_low_1
[»] chr5 (1 HSPs)
chr5 (364-458)||(17060836-17060930)
[»] chr2 (9 HSPs)
chr2 (71-111)||(39153870-39153910)
chr2 (380-458)||(39216847-39216925)
chr2 (380-458)||(39396566-39396644)
chr2 (376-458)||(39421096-39421178)
chr2 (81-159)||(39420815-39420894)
chr2 (71-152)||(39453487-39453568)
chr2 (182-277)||(39472276-39472366)
chr2 (413-458)||(39371307-39371352)
chr2 (71-115)||(39472056-39472099)
[»] chr6 (1 HSPs)
chr6 (380-458)||(16114557-16114635)


Alignment Details
Target: chr5 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 364 - 458
Target Start/End: Complemental strand, 17060930 - 17060836
Alignment:
Q  364 aattttatgatgaacttaccagacactttatttgcaaaacctagtttctcaaacagctccacagataccttgtgctcagcaacagatgcaaaaag 458  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17060930 aattttatgatgaacttaccagacactttatttgcaaaacctagtttctcaaacagctccacagatatcttgtgctcagcaacagatgcaaaaag 17060836  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 39153910 - 39153870
Alignment:
Q  71 ccagaatcttataacaccattataccaaaataaattcaaaa 111  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  39153910 ccagaatcttataacaccattataccaaaataaattcaaaa 39153870  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 380 - 458
Target Start/End: Complemental strand, 39216925 - 39216847
Alignment:
Q  380 taccagacactttatttgcaaaacctagtttctcaaacagctccacagataccttgtgctcagcaacagatgcaaaaag 458  Q
    ||||||| ||||||||||||||||| ||  |||||||||| || | || || |||||||| ||||||||||||||||||    
T  39216925 taccagaaactttatttgcaaaacccagggtctcaaacagttcaatagctatcttgtgctgagcaacagatgcaaaaag 39216847  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 380 - 458
Target Start/End: Original strand, 39396566 - 39396644
Alignment:
Q  380 taccagacactttatttgcaaaacctagtttctcaaacagctccacagataccttgtgctcagcaacagatgcaaaaag 458  Q
    ||||||| ||||||||||||||||| ||  ||||||||||||||| || |  |||||||| |||||| |||||||||||    
T  39396566 taccagaaactttatttgcaaaacccagggtctcaaacagctccatagctgtcttgtgctgagcaaccgatgcaaaaag 39396644  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 376 - 458
Target Start/End: Original strand, 39421096 - 39421178
Alignment:
Q  376 aacttaccagacactttatttgcaaaacctagtttctcaaacagctccacagataccttgtgctcagcaacagatgcaaaaag 458  Q
    ||||||||||| ||||||||||||||||| ||  ||||||||| ||| || | || |||||||| ||||||| ||||||||||    
T  39421096 aacttaccagaaactttatttgcaaaacccagggtctcaaacaactcaactgctatcttgtgctgagcaacaaatgcaaaaag 39421178  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 159
Target Start/End: Original strand, 39420815 - 39420894
Alignment:
Q  81 ataacaccattataccaaaataaattcaaaaagag-ttcacagaataacttgaaatacataagttagattttcaattttg 159  Q
    |||||||||||| || ||||||||||||||||||| |||||||||  |||||| |||||| || || |||||| ||||||    
T  39420815 ataacaccattacacgaaaataaattcaaaaagagattcacagaaagacttgagatacattagctatattttccattttg 39420894  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 39453568 - 39453487
Alignment:
Q  71 ccagaatcttataacaccattataccaaaataaattcaaaaagag-ttcacagaataacttgaaatacataagttagattttc 152  Q
    ||||||||||||||||| |||| ||  |||||||||||||| ||| ||||||||| |||||||||||||| || || ||||||    
T  39453568 ccagaatcttataacactattaaacacaaataaattcaaaacgagtttcacagaa-aacttgaaatacattagctatattttc 39453487  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 277
Target Start/End: Original strand, 39472276 - 39472366
Alignment:
Q  182 aattaagaaaa-agatgtgaaacatttgcaaaccatataatattttcaacatggttctaagattttcaaattctcaaaacaggatataaaattcaaa 277  Q
    ||||||||||| |||||||||||| |||||||||||||     ||  |||| ||||||||||||  || |||||||||| |||||||||||||||||    
T  39472276 aattaagaaaacagatgtgaaacacttgcaaaccatat-----ttcaaacacggttctaagattc-cacattctcaaaataggatataaaattcaaa 39472366  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 458
Target Start/End: Complemental strand, 39371352 - 39371307
Alignment:
Q  413 caaacagctccacagataccttgtgctcagcaacagatgcaaaaag 458  Q
    |||||||||||| || || |||||||||||||||| ||||||||||    
T  39371352 caaacagctccatagctatcttgtgctcagcaacaaatgcaaaaag 39371307  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 39472056 - 39472099
Alignment:
Q  71 ccagaatcttataacaccattataccaaaataaattcaaaaagag 115  Q
    |||||| |||||||||| ||||||| |||||||||||||||||||    
T  39472056 ccagaaccttataacactattatac-aaaataaattcaaaaagag 39472099  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 458
Target Start/End: Complemental strand, 16114635 - 16114557
Alignment:
Q  380 taccagacactttatttgcaaaacctagtttctcaaacagctccacagataccttgtgctcagcaacagatgcaaaaag 458  Q
    |||||||  |||||||||||||||| ||  ||||||||||||||| |  |  |||||||| ||||||||||||||||||    
T  16114635 taccagaagctttatttgcaaaaccgagggtctcaaacagctccataactgtcttgtgctgagcaacagatgcaaaaag 16114557  T

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