View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14241_low_6 (Length: 232)
Name: NF14241_low_6
Description: NF14241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14241_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 26 - 218
Target Start/End: Original strand, 17061052 - 17061246
Alignment:
| Q |
26 |
ttggtgttaatttttggaaaatgaaatagactcaaaatttatctatattttttgtatcacttccatttcataaatggtttgacgaattttaaattattca |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17061052 |
ttggtgttaatttttggaaaatgaaatagactcaaaatttatctatattttttgtatcacttccatttcataaatggtttgacgaattttaaattattca |
17061151 |
T |
|
| Q |
126 |
aactaatttactta--nnnnnnngttaacaggaacttatttaaccttcattctagtaaattttgatgaagtgaaattttgttttcctttgcagat |
218 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
17061152 |
aactaatttacttatttttttttgttaacaggaacttatttaacctccactctagtaaattttgatgaagtgaaattttgttatccattgcagat |
17061246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 33563223 - 33563295
Alignment:
| Q |
42 |
gaaaatgaaatagactcaaaatttatctat-attttttgtatcacttccatttcataaatggtttgacgaatt |
113 |
Q |
| |
|
|||||||||||||||| |||||||||| | ||||| |||||| |||| |||| ||||||||||||| |||| |
|
|
| T |
33563223 |
gaaaatgaaatagacttgaaatttatctctcattttatgtatctcttctattttctaaatggtttgacaaatt |
33563295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 134
Target Start/End: Original strand, 39139828 - 39139935
Alignment:
| Q |
26 |
ttggtgttaatttttggaaaatgaaatagactcaaaatttatctatattttttgtatcacttccatttcataaatggtttgacgaattttaaattattca |
125 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||| |||| | || |||||| ||||||| | ||||||||||||| | ||||| ||||||||| |
|
|
| T |
39139828 |
ttggtgttaatgcgtggaaaatgaaatagacttcaaattcatctct-cttcatgtatctcttccatgttataaatggtttgatggattttgaattattca |
39139926 |
T |
|
| Q |
126 |
aactaattt |
134 |
Q |
| |
|
|| ||||| |
|
|
| T |
39139927 |
gaccaattt |
39139935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University