View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14242_high_17 (Length: 250)
Name: NF14242_high_17
Description: NF14242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14242_high_17 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 34563931 - 34563692
Alignment:
| Q |
12 |
aagaaaatataatcgattcaaccttaatttgtagattgtcactgttacttcatgtagaaccttgcttatagaggtattaatggcctgcttatagtaattt |
111 |
Q |
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| T |
34563931 |
aagaaaatataatcgattcaaccttaatttgtagattgtcactgttacttcatgtagaaccttgcttatagaggtattaatggcctgcttatagtaattt |
34563832 |
T |
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| Q |
112 |
tattaattggagaatgatttgacttttattaattaataatatataacttgtatatagttttcaattagtacattttggagaatattt-nnnnnnngtttt |
210 |
Q |
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| T |
34563831 |
tattaattggagaatgatttgacttttattaattaataatatataacttgtatatagttttcaattagtacattttggagaatatttaaaaaaaggtttt |
34563732 |
T |
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| Q |
211 |
aaccagttgtgcagacctgatttacgtagactttcaatcc |
250 |
Q |
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| T |
34563731 |
aaccagttgtgcagacctgatttacgcagactttcaatcc |
34563692 |
T |
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