View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14242_high_3 (Length: 564)
Name: NF14242_high_3
Description: NF14242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14242_high_3 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 26 - 564
Target Start/End: Complemental strand, 11885283 - 11884743
Alignment:
| Q |
26 |
cttgtttccatttcgcttacttttcaaattgggttatcttaaaattcttggttgtgaaatagctagttgcgaaaacttaaaacgttacatggtgaaatga |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11885283 |
cttgtttccatttcgcttacttttcaaattgggttatcttaaaattcttggttgtgaaatagctagttgcgaaaacttaaaacgttacatggtgaaatga |
11885184 |
T |
|
| Q |
126 |
atttttatacaaatctaaaattatttatacattgttgagacaca--gataaatattgtttaatacatgatcaatataactttattnnnnnnnttgtaaag |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11885183 |
atttttatacaaatctaaaattatttatacattgttgagacacaaagataaatattgtttaatacatgatcaatataactttattaaaaaaattgtaaag |
11885084 |
T |
|
| Q |
224 |
gtgatttataaaatacaaacttttgatccaacacttaatttaacatctccgctacatatatagtattcattttttcatctctacttctaataatatatca |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11885083 |
gtgatttataaaatacaaacttttgatccaacacttaatttaacatctccactacatatatagtattcattttttcatctttacttctaataatatatca |
11884984 |
T |
|
| Q |
324 |
aaggagttttactttaatcaagagttttgcatgatctgtttggaaataggaagcattatgctcaatattttaaaactcgatcttgtgtatccaaaaactc |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11884983 |
aaggagttttactttaatcaagagttttgcatgatctgtttggaaataggaagcattatgctcaatattttaaaactcgatcttgtgtatccaaaaactc |
11884884 |
T |
|
| Q |
424 |
atcaaactacactcttttgcgatacttttcttctcaagaccaactctacaaaagtaaataaataatgaatgagattggaataaaaatcatcaaacaagat |
523 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11884883 |
atcaaactacactcttttgcgatacttttcttctcaagaccaactttacaaaagtaaataaataatgaatgagattggaataaaaatcatcaaacaagat |
11884784 |
T |
|
| Q |
524 |
aaatactcgaattttgcattcaagtgttttctttctgtctg |
564 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11884783 |
aaatactcgaattttgcattcaagtgttttctttctgtctg |
11884743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University