View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14242_high_6 (Length: 423)
Name: NF14242_high_6
Description: NF14242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14242_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 33159355 - 33159060
Alignment:
| Q |
1 |
aatggaagtgtttgtctgcttaatagtggcatcatttaccagggcaccaaaatactttgtgaattgttgaatccattccttatctttacctccacaaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33159355 |
aatggaagtgtttgtctgcttaatagtggcatcatttaccagggcaccaaaatactttgtgaattgttgaatccattccttatctttacctccacaaatg |
33159256 |
T |
|
| Q |
101 |
atgacaatgtcatcctccctcttcatttttcaaaggaaatttattagtcacgnnnnnnnnnnnnctttctcaatttaaacttgtcaacaatgaagagaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33159255 |
atgacaatgtcatcctccctcttcatttttcaaaggaaatttattagtcacg--ttttttttttctttctcaatttaaacttgtcaacaataaagagaat |
33159158 |
T |
|
| Q |
201 |
ggacaatatattaaacttctagaaataatatgcactggatatgtaaaaaagctttgtcacaaacataattatgtttcacaatataggtaaatattact |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33159157 |
ggacaatatattaaacttctagaaataatatgcactggatatgtaaaaaagctttgtcacaaacataattatgtttcacaatataggtaaatattact |
33159060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 33182199 - 33181903
Alignment:
| Q |
1 |
aatggaagtgtttgtctgcttaatagtggcatcatttaccagggcaccaaaatactttgtgaattgttgaatccattccttatctttacctccacaaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33182199 |
aatggaagtgtttgtctgcttaatagtggcatcatttaccagggcaccaaaatactttgtgaattgttgaatccattccttatctttacctccacaaatg |
33182100 |
T |
|
| Q |
101 |
atgacaatgtcatcctccctcttcatttttcaaaggaaatttattagtcacgnnnnnnnnnnnnctttctcaatttaaacttgtcaacaatgaagagaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33182099 |
atgacaatgtcatcctccctcttcatttttcaaaggaaatttattagtcacg-tttttttttttctttctcaatttaaacttgtcaacaataaagagaat |
33182001 |
T |
|
| Q |
201 |
ggacaatatattaaacttctagaaataatatgcactggatatgtaaaaaagctttgtcacaaacataattatgtttcacaatataggtaaatattact |
298 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33182000 |
ggacagtatattaaacttctagaaataatatgcactggatatgtaaaaaagctttgtcacaaacataattatgtttcacaatataggtaaatattact |
33181903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 5 - 106
Target Start/End: Complemental strand, 33140731 - 33140630
Alignment:
| Q |
5 |
gaagtgtttgtctgcttaatagtggcatcatttaccagggcaccaaaatactttgtgaattgttgaatccattccttatctttacctccacaaatgatga |
104 |
Q |
| |
|
||||| || ||||||||||||| |||||||||| | || |||||| |||||| ||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33140731 |
gaagtcttcgtctgcttaatagcggcatcatttgctagagcaccagcatacttagtgaactgttgaatccattccttatctttacctccataaatgatga |
33140632 |
T |
|
| Q |
105 |
ca |
106 |
Q |
| |
|
|| |
|
|
| T |
33140631 |
ca |
33140630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 33287381 - 33287514
Alignment:
| Q |
5 |
gaagtgtttgtctgcttaatagtggcatcatttaccagggcaccaaaatactttgtgaattgttgaatccattccttatctttacctccacaaatgatga |
104 |
Q |
| |
|
||||| |||| |||||||||| | | ||||||| | |||||| | | |||| ||||||| ||| |||||| ||||||||||||||||| ||||||| | |
|
|
| T |
33287381 |
gaagtctttgcctgcttaatatttgtatcatttgctagggcagtagcaaacttggtgaattcttggatccatgccttatctttacctccataaatgataa |
33287480 |
T |
|
| Q |
105 |
caatgtcatcctccctcttcatttttcaaaggaa |
138 |
Q |
| |
|
||| | |||||| |||||||||||||||||| |
|
|
| T |
33287481 |
caaacttctcctcctccttcatttttcaaaggaa |
33287514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University