View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14242_high_7 (Length: 423)
Name: NF14242_high_7
Description: NF14242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14242_high_7 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 40285916 - 40286336
Alignment:
| Q |
1 |
ttatataacccatgttttatctaatatgatgtccaccaccaaaagtatattcattatttttaatatgagtttatctactgattataacatgttcataagt |
100 |
Q |
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| T |
40285916 |
ttatataacccatgttttatcta-tatgatgtccaccaccaaaagtatattcattatttttaatatgagtttatctactgattataacatgttcataagt |
40286014 |
T |
|
| Q |
101 |
tattttcataagctatataggataacatatgaaaacaacttatatgannnnnnnnggacttattttatcttttgttgtaacaatagctatgataagtgtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40286015 |
tattttcataagctatataggataacatatgaaaacaacttatatgattttttttg-acttattttatcttttgttgtaacaatagctatgataagtgtt |
40286113 |
T |
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| Q |
201 |
tatgctataaaggcttaattgtttatccaaatagaaaaagcaacaaaatacaaaggtgaacttgagatttagtattgaaccaaaaccttaacaaattaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40286114 |
tatgctataaaggcttaattgtttatccaaatagaaaaggcaacaaaatacaaaggtgaacttgagatttagtattgaaccaaaaccttaacaaattaac |
40286213 |
T |
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| Q |
301 |
gtgtatgttctcttgctatgttctgaacctaccaatgtaattaagctatatacttcaatttccaacacctaagttaacacgtccttgcgtttaacaaaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40286214 |
gtgtatgttctcttgctatgttctgaacctaccaatgtaattaagctatatacttcaatttccaacacctaagttaacacgtccttgcgtttaacaaaaa |
40286313 |
T |
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| Q |
401 |
atttactatagagaaatttccaa |
423 |
Q |
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| T |
40286314 |
atttactatagagaaatttccaa |
40286336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 26284821 - 26284862
Alignment:
| Q |
100 |
ttattttcataagctatataggataacatatgaaaacaactt |
141 |
Q |
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|||||||||||||||||| |||||||| || ||||||||||| |
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| T |
26284821 |
ttattttcataagctatacaggataacttacgaaaacaactt |
26284862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 31862537 - 31862493
Alignment:
| Q |
100 |
ttattttcataagctatataggataacatatgaaaacaacttata |
144 |
Q |
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||||||||||||||| | ||||||||| |||||||||| |||||| |
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| T |
31862537 |
ttattttcataagctctctaggataacttatgaaaacatcttata |
31862493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 17942117 - 17942059
Alignment:
| Q |
162 |
attttatcttttgttgtaacaatagctatgataagtgtttatgctataaaggcttaatt |
220 |
Q |
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| T |
17942117 |
attttatcttttgttttaaaaatagttaagataagtgcttatgctataagtgcttaatt |
17942059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 5924099 - 5924054
Alignment:
| Q |
100 |
ttattttcataagctatataggataacatatgaaaacaacttatat |
145 |
Q |
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|||||| |||||||| | ||||||||| |||||||||||||||||| |
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| T |
5924099 |
ttatttccataagctctctaggataacttatgaaaacaacttatat |
5924054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 25479625 - 25479581
Alignment:
| Q |
100 |
ttattttcataagctatataggataacatatgaaaacaacttata |
144 |
Q |
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||||||||||||||| | ||||||| | ||||||||||||||||| |
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| T |
25479625 |
ttattttcataagctctctaggatagcttatgaaaacaacttata |
25479581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 237441 - 237397
Alignment:
| Q |
100 |
ttattttcataagctatataggataacatatgaaaacaacttata |
144 |
Q |
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|||||| | |||||| ||||||||||| ||||||||||||||||| |
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| T |
237441 |
ttatttccgtaagctctataggataacttatgaaaacaacttata |
237397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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