View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14242_high_9 (Length: 374)
Name: NF14242_high_9
Description: NF14242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14242_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 35687038 - 35687393
Alignment:
| Q |
1 |
aagttgtgtcacaaatacatcttttctgattttaagttattgatttgaagatattaaggacatgaactttatcattctgattcgtatctgatattattta |
100 |
Q |
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| T |
35687038 |
aagttgtgtcacaaatacatcttttctgattttaagttgttgatttgaagatattaaggacatgaactttatcattctgattcgtatctgatattattta |
35687137 |
T |
|
| Q |
101 |
ttttgtatccggtgtcctacctgacctttgcactgttacagttccttaacagaagctttttgcatagccatattagaggctgctagttgtggattgttaa |
200 |
Q |
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| T |
35687138 |
ttttgtatccggtgtcctacctgacctttgcactgttacagttccttaacagaagctttttgcatagccatattagaggctgctagttgtggattgttaa |
35687237 |
T |
|
| Q |
201 |
cagtcagcacgcgtgtcggaggtgttcctgaggtaggcaccacaagtattttttctattcttatttgatatgtaaattccttttatgtagtttatctttg |
300 |
Q |
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| T |
35687238 |
cagtcagcacgcgtgtcggaggtgttcctgaggtaggcaccacaagtattttttctattcttatttgatatataaattccttttatgtagtttatctttg |
35687337 |
T |
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| Q |
301 |
agaaattttcttatacacttcagtttcttgtcaattccaatattttggactactat |
356 |
Q |
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| T |
35687338 |
agaaattttcttatacacttcagtttcttgtcaattccaatattttggactactat |
35687393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 134 - 239
Target Start/End: Complemental strand, 40671168 - 40671063
Alignment:
| Q |
134 |
tgttacagttccttaacagaagctttttgcatagccatattagaggctgctagttgtggattgttaacagtcagcacgcgtgtcggaggtgttcctgagg |
233 |
Q |
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|||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| |
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| T |
40671168 |
tgtttcagttccttaacggaagctttttgcatagctatattagaggctgctagttgtggattgttaacagtcagcacacgtgttggaggagttcctgagg |
40671069 |
T |
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| Q |
234 |
taggca |
239 |
Q |
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|||||| |
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| T |
40671068 |
taggca |
40671063 |
T |
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