View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14242_low_12 (Length: 379)
Name: NF14242_low_12
Description: NF14242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14242_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 358
Target Start/End: Original strand, 52484191 - 52484507
Alignment:
| Q |
18 |
agttgaggttgttggatttggtcgtttttgggtggaccattgaagcgagaagctagagctatggtacctatgacaaggtttacaatgatgaaaatagaag |
117 |
Q |
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| T |
52484191 |
agttgaggttgttggatttggtcgtttttgggtggaccattgaagcgagaagctagagctatggtacctatgacaaggtttacaatgatgaaaatagaag |
52484290 |
T |
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| Q |
118 |
aaggtgtgaaccatgttgctatgaaagttgttgggtctgccatcgttgttaatttcttaatttggagggtttttgcgttgagatcgagcttcaacactga |
217 |
Q |
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| T |
52484291 |
aaggtgtgaaccatgttgctatgaaagttgttgggtctgccatcgttgttaatttcttaatttggagggtttttgcgttga----gaccttcaac----a |
52484382 |
T |
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| Q |
218 |
ctgaagagtgaagacaatgtagggtgggggtgtaaatagagaaaggaaaaatcaccatttacgtcttagtcatgtagtcagaagaaaggag-aaaaaagt |
316 |
Q |
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| T |
52484383 |
ctgaagagtgaa---------------gggtgtaaatagagaaagg-aaaatcaccatttacgtc-tagtcatgtagtcagaagaaaggagaaaaaaagt |
52484465 |
T |
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| Q |
317 |
tgataaatnnnnnnntaccatggggctggggaacttgtttct |
358 |
Q |
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| T |
52484466 |
tgataaataaataaatatcatgggggtggggaacttgtttct |
52484507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 130
Target Start/End: Original strand, 52464891 - 52464962
Alignment:
| Q |
59 |
gaagcgagaagctagagctatggtacctatgacaaggtttacaatgatgaaaatagaagaaggtgtgaacca |
130 |
Q |
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| T |
52464891 |
gaagcgagaaacgagagcaatggtaccaatgacaaggttaacaaagatgaaaagaggagagggtgtgaacca |
52464962 |
T |
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