View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14242_low_14 (Length: 373)

Name: NF14242_low_14
Description: NF14242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14242_low_14
NF14242_low_14
[»] chr5 (4 HSPs)
chr5 (167-373)||(31778690-31778897)
chr5 (1-140)||(31778556-31778695)
chr5 (1-159)||(9890373-9890529)
chr5 (94-159)||(11831462-11831527)
[»] chr4 (4 HSPs)
chr4 (223-373)||(1509584-1509735)
chr4 (1-107)||(1509431-1509537)
chr4 (97-159)||(6970620-6970682)
chr4 (66-159)||(8023923-8024016)
[»] chr6 (5 HSPs)
chr6 (29-159)||(19840887-19841017)
chr6 (1-145)||(28052166-28052310)
chr6 (1-157)||(31926312-31926468)
chr6 (71-159)||(13117481-13117569)
chr6 (95-158)||(30490158-30490221)
[»] scaffold0329 (1 HSPs)
scaffold0329 (22-156)||(19551-19685)
[»] chr7 (5 HSPs)
chr7 (24-159)||(7474474-7474609)
chr7 (39-172)||(1096753-1096886)
chr7 (44-119)||(37141985-37142060)
chr7 (44-159)||(32069016-32069131)
chr7 (58-159)||(1556252-1556353)
[»] chr3 (2 HSPs)
chr3 (36-159)||(27056859-27056982)
chr3 (22-118)||(27383114-27383210)
[»] scaffold0351 (1 HSPs)
scaffold0351 (39-137)||(2895-2993)
[»] chr1 (4 HSPs)
chr1 (1-119)||(32933359-32933477)
chr1 (51-159)||(39834883-39834992)
chr1 (36-107)||(17198539-17198610)
chr1 (99-156)||(29828121-29828178)
[»] chr8 (2 HSPs)
chr8 (36-155)||(26925134-26925254)
chr8 (1-159)||(12050858-12051016)


Alignment Details
Target: chr5 (Bit Score: 180; Significance: 4e-97; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 167 - 373
Target Start/End: Original strand, 31778690 - 31778897
Alignment:
Q  167 cctagccaaaacccaactaatctgtagtcaaatatcggttaatagcataagttccgcaactaaatggcttggatattgtagcaatagtttcgtagtaaat 266  Q
    ||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31778690 cctagccaaaacccaactaatctgtagccaaatatcggttaaaagtataagttccgcaactaaatggcttggatattgtagcaatagtttcgtagtaaat 31778789  T
Q  267 ctctagctacaagttcctagctatttccaatgaaaatccaaacttttacgatttattc-cataatataaatgttgctcagttgtttattcttaggcgtta 365  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  31778790 ctctagctaaaagttcctagctatttccaatgaaaatccaagcttttacgatttattcacataatataaatgttgctcagttgtttattcttaggcgtta 31778889  T
Q  366 atcccaat 373  Q
    ||||||||    
T  31778890 atcccaat 31778897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 31778556 - 31778695
Alignment:
Q  1 tttgctacaaaacaaatggttgctaactcacagccaatttcttgcaaaactcatttagctaccctttagttgtgatttagctgtcaaactgtccgtagca 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  31778556 tttgctacaaaacaaatggttgctaactcacagctaatttcttgcaaaactcatttagctaccctttagttgtgatttagctgtcatactggccgtagca 31778655  T
Q  101 tggattgtgcggcaaattatcaaataaaatatttcctagc 140  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  31778656 tggattgggcggcaaattatcaaataaaatatttcctagc 31778695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 9890373 - 9890529
Alignment:
Q  1 tttgctacaaaacaaatggttgctaactcacagccaatttcttgcaaaactcatttagctacccttt---agttgtgatttagctgtcaaactgtccgta 97  Q
    |||||||| ||  |||| || |||||| | |||| ||| ||| |||||||||||||| ||||| |||   |||||||||||||||||||   ||  | ||    
T  9890373 tttgctacgaattaaatcgtagctaacgcgcagctaatatctagcaaaactcatttacctaccattttttagttgtgatttagctgtca---tgatc-ta 9890468  T
Q  98 gcatggattgtgcggcaaattatcaaataaaatatttcctagctaatttgcaactaatattt 159  Q
    |||||||||| ||||||||||| || | |||||||||||||||||| | | |||||||||||    
T  9890469 gcatggattgggcggcaaatta-catagaaaatatttcctagctaactggaaactaatattt 9890529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 159
Target Start/End: Complemental strand, 11831527 - 11831462
Alignment:
Q  94 cgtagcatggattgtgcggcaaattatcaaataaaatatttcctagctaatttgcaactaatattt 159  Q
    |||||||||||||| ||| ||||||| | |  |||||||||||||||||| | |||| ||||||||    
T  11831527 cgtagcatggattgggcgtcaaattacctatcaaaatatttcctagctaactggcaattaatattt 11831462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 223 - 373
Target Start/End: Original strand, 1509584 - 1509735
Alignment:
Q  223 caactaaatggcttggatattgtagcaatagtttcgtagtaaatctctagctacaagttcctagctatttccaatgaaaatccaaacttttacgatttat 322  Q
    ||||||||||||||||||||||| |||| |||||| ||||||||| ||||||||||||||||||||||||| |||||||||| || |||||||| |||||    
T  1509584 caactaaatggcttggatattgttgcaaaagtttcatagtaaatcactagctacaagttcctagctatttcaaatgaaaatcaaagcttttacggtttat 1509683  T
Q  323 tc-cataatataaatgttgctcagttgtttattcttaggcgttaatcccaat 373  Q
    ||  ||| |||||||||||||||||||||||||||||||||||| |||||||    
T  1509684 tcatatattataaatgttgctcagttgtttattcttaggcgttactcccaat 1509735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 1509431 - 1509537
Alignment:
Q  1 tttgctacaaaacaaatggttgctaactcacagccaatttcttgcaaaactcatttagctaccctttagttgtgatttagctgtcaaactgtccgtagca 100  Q
    |||||||||||||||||||| |||||||| |||| ||||||| |||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||    
T  1509431 tttgctacaaaacaaatggtagctaactcgcagctaatttctagcaaaactcatttagctaccttttagttgtgatttagctgtcatactggccgtagca 1509530  T
Q  101 tggattg 107  Q
    |||||||    
T  1509531 tggattg 1509537  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 6970620 - 6970682
Alignment:
Q  97 agcatggattgtgcggcaaattatcaaataaaatatttcctagctaatttgcaactaatattt 159  Q
    ||||||||||| ||||||||||||| | | |||||||||||||||||||||| |||| |||||    
T  6970620 agcatggattgggcggcaaattatctactgaaatatttcctagctaatttgccactattattt 6970682  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 159
Target Start/End: Original strand, 8023923 - 8024016
Alignment:
Q  66 ttagttgtgatttagctgtcaaactgtccgtagcatggattgtgcggcaaattatcaaataaaatatttcctagctaatttgcaactaatattt 159  Q
    ||||||| || |||||||||| | || ||||||||||||||   | |||||||||| | ||||||| ||||||| ||||| | |||||||||||    
T  8023923 ttagttgggaattagctgtcatattggccgtagcatggatttgacagcaaattatctattaaaataattcctaggtaattggtaactaatattt 8024016  T

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Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 29 - 159
Target Start/End: Complemental strand, 19841017 - 19840887
Alignment:
Q  29 cacagccaatttcttgcaaaactcatttagctaccctttagttgtgatttagctgtcaaactgtccgtagcatggattgtgcggcaaattatcaaataaa 128  Q
    |||||| ||||||| |||||||||||||| ||||| |||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||| |  |||    
T  19841017 cacagctaatttctagcaaaactcatttacctaccatttagttgtgatttagctgtcacactggccgtagcatggattgggcggcaaattatctaccaaa 19840918  T
Q  129 atatttcctagctaatttgcaactaatattt 159  Q
    ||||||||||||||||| |||||||||||||    
T  19840917 atatttcctagctaattcgcaactaatattt 19840887  T

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Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 28052310 - 28052166
Alignment:
Q  1 tttgctacaaaacaaatggttgctaactcacagccaatttcttgcaaaactcatttagctaccctttagttgtgatttagctgtcaaactgtccgtagca 100  Q
    ||||||| |||||||||||| ||| ||||  ||| ||||||| |||||||||||||||||||| ||| |||||||||||||||||| ||   ||||||||    
T  28052310 tttgctataaaacaaatggtagcttactcgtagctaatttctagcaaaactcatttagctaccatttggttgtgatttagctgtcatacatgccgtagca 28052211  T
Q  101 tggattgtgcggcaaattatcaaataaaatatttcctagctaatt 145  Q
    || |||| ||||||||||||| | |||||||||||||||| ||||    
T  28052210 tgtattgggcggcaaattatctagtaaaatatttcctagcaaatt 28052166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 31926468 - 31926312
Alignment:
Q  1 tttgctacaaaacaaatggttgctaactcacagccaatttcttgcaaaactcatttagctaccctttagttgtgatttagctgtcaaactgtccgtagca 100  Q
    |||||||| ||||||||||  ||||||||  ||| ||||||| |||||||| ||| ||||||| |||||||||||||||||||||  |||| ||||||||    
T  31926468 tttgctacgaaacaaatggaagctaactcgtagctaatttctagcaaaacttattaagctaccatttagttgtgatttagctgtcgtactggccgtagca 31926369  T
Q  101 tggattgtgcggcaaattatcaaataaaatatttcctagctaatttgcaactaatat 157  Q
    ||||||| |||| |||| | | | |||  ||||||| |||||||| |||||||||||    
T  31926368 tggattgggcggaaaatcacctagtaagttatttccgagctaattggcaactaatat 31926312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 71 - 159
Target Start/End: Original strand, 13117481 - 13117569
Alignment:
Q  71 tgtgatttagctgtcaaactgtccgtagcatggattgtgcggcaaattatcaaataaaatatttcctagctaatttgcaactaatattt 159  Q
    ||||| |||||||||| | ||  | |||||||||||| | ||||||||||| | |||||||||||||||||||||  ||||||||||||    
T  13117481 tgtgaattagctgtcacattgatcctagcatggattgagtggcaaattatctagtaaaatatttcctagctaattctcaactaatattt 13117569  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 158
Target Start/End: Original strand, 30490158 - 30490221
Alignment:
Q  95 gtagcatggattgtgcggcaaattatcaaataaaatatttcctagctaatttgcaactaatatt 158  Q
    ||||||||||||| |||| |||||||| |  |||||||||||||||||||| | ||||||||||    
T  30490158 gtagcatggattgggcggaaaattatctaccaaaatatttcctagctaattggtaactaatatt 30490221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 22 - 156
Target Start/End: Complemental strand, 19685 - 19551
Alignment:
Q  22 gctaactcacagccaatttcttgcaaaactcatttagctaccctttagttgtgatttagctgtcaaactgtccgtagcatggattgtgcggcaaattatc 121  Q
    |||| |||||||| ||||||| |||||| | ||| | ||| | |||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||    
T  19685 gctatctcacagctaatttctagcaaaattgattcacctatcatttagttgtgatttagctgtcatactggccgtagcatggattgggcggcaaattatc 19586  T
Q  122 aaataaaatatttcctagctaatttgcaactaata 156  Q
    ||  |||||||||||||||||||||||||||||||    
T  19585 aatcaaaatatttcctagctaatttgcaactaata 19551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 7474609 - 7474474
Alignment:
Q  24 taactcacagccaatttcttgcaaaactcatttagctaccctttagttgtgatttagctgtcaaactgtccgtagcatggattgtgcggcaaattatcaa 123  Q
    |||||| |||| | ||||| |||||||||||||||||||  ||| |||||||||||||||||| |||| |||||| |||||||| ||||||||||||| |    
T  7474609 taactcgcagctattttctagcaaaactcatttagctactattttgttgtgatttagctgtcatactggccgtagtatggattgggcggcaaattatcta 7474510  T
Q  124 ataaaatatttcctagctaatttgcaactaatattt 159  Q
       |||||||||||||||||||||||||||||||||    
T  7474509 gagaaatatttcctagctaatttgcaactaatattt 7474474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 39 - 172
Target Start/End: Complemental strand, 1096886 - 1096753
Alignment:
Q  39 ttcttgcaaaactcatttagctaccctttagttgtgatttagctgtcaaactgtccgtagcatggattgtgcggcaaattatcaaataaaatatttccta 138  Q
    |||| |||||||||||||| ||||| |||||||||||||||||||||| | || ||||||||||||||  ||||||||||| |||  |||||||||||||    
T  1096886 ttctagcaaaactcatttacctaccatttagttgtgatttagctgtcatattgaccgtagcatggatttggcggcaaattaccaagcaaaatatttccta 1096787  T
Q  139 gctaatttgcaactaatattttaagatgcctagc 172  Q
    ||| ||||||||||||||||| || || ||||||    
T  1096786 gcttatttgcaactaatatttaaaaattcctagc 1096753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 44 - 119
Target Start/End: Original strand, 37141985 - 37142060
Alignment:
Q  44 gcaaaactcatttagctaccctttagttgtgatttagctgtcaaactgtccgtagcatggattgtgcggcaaatta 119  Q
    ||||||| |||||||||||| |||||||||||||||||||||| |||| ||||||||||||||| |||| ||||||    
T  37141985 gcaaaacacatttagctaccatttagttgtgatttagctgtcatactggccgtagcatggattgggcggaaaatta 37142060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 44 - 159
Target Start/End: Original strand, 32069016 - 32069131
Alignment:
Q  44 gcaaaactcatttagctaccctttagttgtgatttagctgtcaaactgtccgtagcatggattgtgcggcaaattatcaaataaaatatttcctagctaa 143  Q
    ||||||| |||||||||||   || |||| || |||||||||| | || | ||||||||||||| ||||||||||||| |  |||||||||||||||||     
T  32069016 gcaaaacacatttagctactactttgttgggaattagctgtcatattggctgtagcatggattgggcggcaaattatctatcaaaatatttcctagctat 32069115  T
Q  144 tttgcaactaatattt 159  Q
    || |||||||| ||||    
T  32069116 ttggcaactaaaattt 32069131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 159
Target Start/End: Complemental strand, 1556353 - 1556252
Alignment:
Q  58 gctaccctttagttgtgatttagctgtcaaactgtccgtagcatggattgtgcggcaaattatcaaataaaatatttcctagctaatttgcaactaatat 157  Q
    |||||| ||||| |||||||||||||||| |||| | |||||||||| || || |||||||| | |  |||||||| |||||| |||  | |||||||||    
T  1556353 gctaccttttaggtgtgatttagctgtcatactggctgtagcatggaatgggcagcaaattacctagcaaaatattacctagccaatcggtaactaatat 1556254  T
Q  158 tt 159  Q
    ||    
T  1556253 tt 1556252  T

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Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 36 - 159
Target Start/End: Original strand, 27056859 - 27056982
Alignment:
Q  36 aatttcttgcaaaactcatttagctaccctttagttgtgatttagctgtcaaactgtccgtagcatggattgtgcggcaaattatcaaataaaatatttc 135  Q
    ||||||| |||||||||||||| ||||| |||||||||||||||||||||| |||| || |||||||||||| |||||| |||  | |  ||||||||||    
T  27056859 aatttctagcaaaactcatttacctaccatttagttgtgatttagctgtcatactggccctagcatggattgggcggcacattgcctagaaaaatatttc 27056958  T
Q  136 ctagctaatttgcaactaatattt 159  Q
    ||||  |||| |||||||||||||    
T  27056959 ctagaaaattggcaactaatattt 27056982  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 27383114 - 27383210
Alignment:
Q  22 gctaactcacagccaatttcttgcaaaactcatttagctaccctttagttgtgatttagctgtcaaactgtccgtagcatggattgtgcggcaaatt 118  Q
    |||||| || ||| ||||||| ||||||| || ||| ||||| |||||||||||||||||||||| |||| ||||||||||||||| ||||||||||    
T  27383114 gctaacgcatagctaatttctagcaaaacacagttacctaccatttagttgtgatttagctgtcatactggccgtagcatggattgggcggcaaatt 27383210  T

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Target: scaffold0351 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 39 - 137
Target Start/End: Original strand, 2895 - 2993
Alignment:
Q  39 ttcttgcaaaactcatttagctaccctttagttgtgatttagctgtcaaactgtccgtagcatggattgtgcggcaaattatcaaataaaatatttcct 137  Q
    |||| |||||||||||||||||||  |||||||||||||||||||||| |||| |||| |||||||||| ||||||||||||| |  ||||||||||||    
T  2895 ttctagcaaaactcatttagctactatttagttgtgatttagctgtcatactggccgtggcatggattgggcggcaaattatctagcaaaatatttcct 2993  T

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Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 32933477 - 32933359
Alignment:
Q  1 tttgctacaaaacaaatggttgctaactcacagccaatttcttgcaaaactcatttagctaccctttagttgtgatttagctgtcaaactgtccgtagca 100  Q
    |||||||| ||||||||||| ||||||||   || | ||||| |||||||||||||||||||| ||| |||||||||||||||||| || | ||||||||    
T  32933477 tttgctacgaaacaaatggtagctaactcgttgctagtttctagcaaaactcatttagctaccattttgttgtgatttagctgtcacaccggccgtagca 32933378  T
Q  101 tggattgtgcggcaaatta 119  Q
    ||||||| ||||| |||||    
T  32933377 tggattgggcggctaatta 32933359  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 51 - 159
Target Start/End: Complemental strand, 39834992 - 39834883
Alignment:
Q  51 tcatttagctaccctttagttgtgatttagctgtcaaactgtccgtagcatggatt-gtgcggcaaattatcaaataaaatatttcctagctaatttgca 149  Q
    ||||||| ||||| |||||| ||||||||||||||| |||| |||||||||||||| | ||||||||||  | |  |||||||||||||||||||| |||    
T  39834992 tcatttacctaccatttagtcgtgatttagctgtcatactggccgtagcatggattggggcggcaaattgcctagcaaaatatttcctagctaattggca 39834893  T
Q  150 actaatattt 159  Q
    ||||||||||    
T  39834892 actaatattt 39834883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 17198539 - 17198610
Alignment:
Q  36 aatttcttgcaaaactcatttagctaccctttagttgtgatttagctgtcaaactgtccgtagcatggattg 107  Q
    ||||||| | ||||| |||||||||| | |||||||||||||||||||||| ||||  ||||||||||||||    
T  17198539 aatttctaggaaaacacatttagctatcatttagttgtgatttagctgtcatactggtcgtagcatggattg 17198610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 156
Target Start/End: Original strand, 29828121 - 29828178
Alignment:
Q  99 catggattgtgcggcaaattatcaaataaaatatttcctagctaatttgcaactaata 156  Q
    ||||||||| | ||||||||||| || ||||||||||| ||||||||| |||||||||    
T  29828121 catggattgggtggcaaattatctaagaaaatatttccaagctaatttacaactaata 29828178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 155
Target Start/End: Original strand, 26925134 - 26925254
Alignment:
Q  36 aatttcttgcaaaactcatttagctaccc-tttagttgtgatttagctgtcaaactgtccgtagcatggattgtgcggcaaattatcaaataaaatattt 134  Q
    ||||||| |||||||||| ||||||||   ||| |||||||||||| | |||||||| |||| |||||||||| |||||||||||   |  |||||||||    
T  26925134 aatttctagcaaaactcaattagctacaaatttggttgtgatttaggtatcaaactggccgtggcatggattgggcggcaaattacatagcaaaatattt 26925233  T
Q  135 cctagctaatttgcaactaat 155  Q
    ||||||| ||| |||||||||    
T  26925234 cctagcttattcgcaactaat 26925254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 12051016 - 12050858
Alignment:
Q  1 tttgctacaaaacaaatggttgctaactcacagccaatttcttgcaaaactcatttagctaccctttagttgtgatttagctgtcaaactgtccgtagca 100  Q
    |||||||| |||| |||||| | |||| |  ||| |||| || |||||||||||||||||||  |||||||| || | |||||||| |||  |||||||     
T  12051016 tttgctacgaaactaatggtcgttaacacgtagctaattcctagcaaaactcatttagctactatttagttgggaatcagctgtcatactagccgtagcc 12050917  T
Q  101 tggattgtgcggcaaattatcaaataaaatatttcctagctaatttgcaactaatattt 159  Q
    ||||||| |||| |||||| | |    |||||||||||||||| | ||| |||||||||    
T  12050916 tggattgggcggaaaattacctagcctaatatttcctagctaagtggcatctaatattt 12050858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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