View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14242_low_15 (Length: 371)
Name: NF14242_low_15
Description: NF14242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14242_low_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 307
Target Start/End: Original strand, 2043724 - 2044012
Alignment:
| Q |
16 |
agaaaagaagaaagatgaaatacatttctggtgtgattttcttctccaacaagaaacatatgatagacagacacagcacacgtggactgtgaggaatgac |
115 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2043724 |
agaaaagaagaaagataaaatacatttctggtgtgattttcttctccaacaagaaacatatgatagacagacacagcacacgtggactgtgaggaatgac |
2043823 |
T |
|
| Q |
116 |
cagttctcatagctctaatttataggacaagttaaatgaccagttctcaatgtatcattactcttttaactattttatcaaaatataaatttaatagttt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2043824 |
cagttctcatagctctaatttataggacaagttaaatgaccagttctcaatgtatcattactc-tttaactattttatcaaaatataaatttaatagttt |
2043922 |
T |
|
| Q |
216 |
gttcaaggtattttcagttctattgttttcttgatnnnnnnnnngtcacaacattaaagaataacaacatgcctggtggtggacgtgctggt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2043923 |
gttcaaggtattttcagttctattgttttcttgat--ataaaaagtcacaacataaaagaataacaacatgcctggtggtggacgtgctggt |
2044012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University