View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14242_low_19 (Length: 276)
Name: NF14242_low_19
Description: NF14242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14242_low_19 |
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| [»] scaffold0061 (1 HSPs) |
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| [»] scaffold0017 (1 HSPs) |
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Alignment Details
Target: scaffold0061 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 52 - 215
Target Start/End: Complemental strand, 50232 - 50069
Alignment:
| Q |
52 |
taatttaatgcactctttagatatgatcttccacactatatatgctgcatatatcaaccattctcaggaaatatatcaacctagcttatggaccataaac |
151 |
Q |
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| T |
50232 |
taatataatgcactctttagatatgatcttccacactatatatgctgcatatatcaaccattctcaggaaatatatcaacctagcttatggaccataaac |
50133 |
T |
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| Q |
152 |
acaaatctaatataaacacaaaaataaaacgaaaggaatgaagaaggagaaccatctcacatta |
215 |
Q |
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| T |
50132 |
ataaatctaatataaacacaaaaataaaacgaaaggaatgaagaaggagaaccatctcacatta |
50069 |
T |
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Target: scaffold0017 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 52 - 215
Target Start/End: Original strand, 148402 - 148565
Alignment:
| Q |
52 |
taatttaatgcactctttagatatgatcttccacactatatatgctgcatatatcaaccattctcaggaaatatatcaacctagcttatggaccataaac |
151 |
Q |
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| T |
148402 |
taatataatgcactctttagatatgatcttccacactatatatgctgcatatatcaaccattctcaggaaatatatcaacctagcttatggaccataaac |
148501 |
T |
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| Q |
152 |
acaaatctaatataaacacaaaaataaaacgaaaggaatgaagaaggagaaccatctcacatta |
215 |
Q |
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| T |
148502 |
ataaatctaatataaacacaaaaataaaacgaaaggaatgaagaaggagaaccatctcacatta |
148565 |
T |
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Back To:
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Target: chr5 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 72 - 260
Target Start/End: Original strand, 38941119 - 38941310
Alignment:
| Q |
72 |
atatgatcttccacactatatatgctgcatatatcaaccattctcaggaaatatatcaacctagcttatggaccataaacacaaatctaatataaacaca |
171 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||| |||||||||||||| |
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| T |
38941119 |
atatgatcttccacactatatatgctgcatatatcaaccattctcaaaaaatatatcaacctagcttataaaccacaaacacaaacctaatataaacaca |
38941218 |
T |
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| Q |
172 |
aaaataaaacgaaaggaatgaagaaggagaaccatctcacattagtaagaaaagagaa---attgatcatatgataaaacaaaaggaagaag |
260 |
Q |
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||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||| | | |||||||||||| |||||||||||||| |
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| T |
38941219 |
taaataaaacaaaacgaaggaagaaggagaaccatctcacattagtaagaaaagagaaaataatcatcatatgataagacaaaaggaagaag |
38941310 |
T |
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