View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14242_low_24 (Length: 248)
Name: NF14242_low_24
Description: NF14242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14242_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 9e-85; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 43 - 230
Target Start/End: Original strand, 43206292 - 43206479
Alignment:
| Q |
43 |
gtttgtttttccttttcatcaaacccagataaaatccatgatcataattgaaaaccaaaaccttaagaagnnnnnnntgtagacctgaataagaagagca |
142 |
Q |
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| T |
43206292 |
gtttgtttttccttttcatcaaacccagataaaatccatgatcataattgaaaaccaaaatcttaagaagaacaaaaagtagacctgaataagaagagca |
43206391 |
T |
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| Q |
143 |
tccatatcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtttatatt |
230 |
Q |
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| T |
43206392 |
tccatatcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtttatatt |
43206479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 123 - 230
Target Start/End: Original strand, 43227882 - 43227989
Alignment:
| Q |
123 |
agacctgaataagaagagcatccatatcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatg |
222 |
Q |
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||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43227882 |
agacctgcatgagaagagcatccatgtcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatg |
43227981 |
T |
|
| Q |
223 |
tttatatt |
230 |
Q |
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|||||||| |
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| T |
43227982 |
tttatatt |
43227989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 120 - 230
Target Start/End: Original strand, 43224078 - 43224188
Alignment:
| Q |
120 |
tgtagacctgaataagaagagcatccatatcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactgg |
219 |
Q |
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| T |
43224078 |
tgtagacctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactgg |
43224177 |
T |
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| Q |
220 |
atgtttatatt |
230 |
Q |
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||||||||||| |
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| T |
43224178 |
atgtttatatt |
43224188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 125 - 229
Target Start/End: Complemental strand, 41650275 - 41650171
Alignment:
| Q |
125 |
acctgaataagaagagcatccatatcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtt |
224 |
Q |
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| T |
41650275 |
acctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtt |
41650176 |
T |
|
| Q |
225 |
tatat |
229 |
Q |
| |
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||||| |
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| T |
41650175 |
tatat |
41650171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 125 - 229
Target Start/End: Complemental strand, 41654815 - 41654711
Alignment:
| Q |
125 |
acctgaataagaagagcatccatatcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtt |
224 |
Q |
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||||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41654815 |
acctgcataagaagagcatccatttcagctctgagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtt |
41654716 |
T |
|
| Q |
225 |
tatat |
229 |
Q |
| |
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||||| |
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| T |
41654715 |
tatat |
41654711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 125 - 229
Target Start/End: Original strand, 43213348 - 43213452
Alignment:
| Q |
125 |
acctgaataagaagagcatccatatcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtt |
224 |
Q |
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||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
43213348 |
acctgcataagaagagcatccatctcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactacaactggatgtt |
43213447 |
T |
|
| Q |
225 |
tatat |
229 |
Q |
| |
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||||| |
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| T |
43213448 |
tatat |
43213452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 136 - 228
Target Start/End: Original strand, 5073627 - 5073719
Alignment:
| Q |
136 |
aagagcatccatatcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtttata |
228 |
Q |
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||||||||||||||||||||| | |||||||||||||| | |||||||||||| ||||||| ||||| || | ||||||||||| |||||| |
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| T |
5073627 |
aagagcatccatatcagctcttaaagcaacaaaaggagacaatccagttcctatgaaaccaatgacaccagtgattgcaactggatatttata |
5073719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 173
Target Start/End: Original strand, 31839458 - 31839492
Alignment:
| Q |
139 |
agcatccatatcagctctaagagcaacaaaaggag |
173 |
Q |
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| T |
31839458 |
agcatccatgtcagctctaagagcaacaaaaggag |
31839492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 26262888 - 26262851
Alignment:
| Q |
139 |
agcatccatatcagctctaagagcaacaaaaggaggaa |
176 |
Q |
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||||||||| |||||||||||||||||||| ||||||| |
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| T |
26262888 |
agcatccatgtcagctctaagagcaacaaatggaggaa |
26262851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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