View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14242_low_26 (Length: 242)
Name: NF14242_low_26
Description: NF14242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14242_low_26 |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 8451146 - 8451347
Alignment:
| Q |
18 |
gatgagacaatatatactgatattgagtttctttcattttataataataattgttaaattttaaatgttcaattggagatgttgcatttcagctggaact |
117 |
Q |
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| T |
8451146 |
gatgagacaatatatactgatattgagtttctttcattttataataataattgttaaattttaaatgttcaattggagatgttgcatttcagctggaact |
8451245 |
T |
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| Q |
118 |
tcctcctccttccagcagaattcatccagtgtttcatgtttcgcaggtctctttcatgaggacgccacttgggaagattacactgacattatgagcacct |
217 |
Q |
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| T |
8451246 |
tcctcctccttccagcagaattcatccagtgtttcatgtttcgcaggtctctttcatgaggacgccacttgggaagattacactgacattatgagcacct |
8451345 |
T |
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| Q |
218 |
at |
219 |
Q |
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|| |
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| T |
8451346 |
at |
8451347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 8428054 - 8427981
Alignment:
| Q |
87 |
caattggagatgttgcatttcagctggaacttcctcctccttccagcagaattcatccagtgtttcatgtttcgcag |
163 |
Q |
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| T |
8428054 |
caattggagatgttgcatttcagctggaacttcctcct---tccagtagaattcatccagtgtttcatgtttcgcag |
8427981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 8428281 - 8428225
Alignment:
| Q |
35 |
tgatattgagtttctttcattttataataataattgttaaattttaaatgttcaatt |
91 |
Q |
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| T |
8428281 |
tgatattgagtttctttcattttataataataattgttaaattttaaatgttcaatt |
8428225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 8427840 - 8427783
Alignment:
| Q |
162 |
aggtctctttcatgaggacgccacttgggaagattacactgacattatgagcacctat |
219 |
Q |
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| T |
8427840 |
aggtctctttcatgaggacgccacttgggaagattacattgacattatgagcacctat |
8427783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 8408902 - 8408962
Alignment:
| Q |
31 |
atactgatattgagtttctttcattttataataataattgttaaattttaaatgttcaatt |
91 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
8408902 |
atacagatattgagtttcttttattttataataataattgttaaattttaaatgttcaatt |
8408962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 8414243 - 8414284
Alignment:
| Q |
45 |
tttctttcattttataataataattgttaaattttaaatgttca |
88 |
Q |
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| T |
8414243 |
tttctttcattttataataataattgttaa--tttaaatgttca |
8414284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 7916069 - 7916035
Alignment:
| Q |
34 |
ctgatattgagtttctttcattttataataataat |
68 |
Q |
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| T |
7916069 |
ctgatattgagtttcttttattttataataataat |
7916035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 73178 - 73140
Alignment:
| Q |
31 |
atactgatattgagtttctttcattttataataataatt |
69 |
Q |
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| T |
73178 |
atactgatattgaatttctttcattttataataagaatt |
73140 |
T |
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