View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14242_low_27 (Length: 237)
Name: NF14242_low_27
Description: NF14242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14242_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 11676730 - 11676951
Alignment:
| Q |
1 |
tgatgccctaaatgtctgcagcatcattgaaagaaatggttctatattaggcttgtagccacaaataagcatatccttcagaatattagtgacctctcca |
100 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
11676730 |
tgatgccctaaatgtctggagcatcattgaaagaaatggttctatattaggcttgtagccacaaataagcatatccttcagaatattagcgacctctcca |
11676829 |
T |
|
| Q |
101 |
gaaaacatcaagtccaaaacctcatgtgccttcattgaatcagttagtattgtgttcagttgattaactacttttctctgnnnnnnnncgaaaacactgt |
200 |
Q |
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| T |
11676830 |
gaaaacatcaagtccaaaacctcgtgtgccttcattgaatcagttagtattgtgttcagttgattaacaacttttctctgttttttttcgaaaacactgt |
11676929 |
T |
|
| Q |
201 |
ccttgacatcgagagtggataa |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
11676930 |
ccttgacatcgagagtggataa |
11676951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 11684467 - 11684688
Alignment:
| Q |
1 |
tgatgccctaaatgtctgcagcatcattgaaagaaatggttctatattaggcttgtagccacaaataagcatatccttcagaatattagtgacctctcca |
100 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
11684467 |
tgatgccctaaatgtctggagcatcattgaaagaaatggttctatattaggcttgtagccacaaataagcatatccttcagaatattagcgacctctcca |
11684566 |
T |
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| Q |
101 |
gaaaacatcaagtccaaaacctcatgtgccttcattgaatcagttagtattgtgttcagttgattaactacttttctctgnnnnnnnncgaaaacactgt |
200 |
Q |
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| T |
11684567 |
gaaaacatcaagtccaaaacctcgtgtgccttcattgaatcagttagtattgtgttcagttgattaacaacttttctctgttttttttcgaaaacactgt |
11684666 |
T |
|
| Q |
201 |
ccttgacatcgagagtggataa |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
11684667 |
ccttgacatcgagagtggataa |
11684688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 11629306 - 11629089
Alignment:
| Q |
5 |
gccctaaatgtctgcagcatcattgaaagaaatggttctatattaggcttgtagccacaaataagcatatccttcagaatattagtgacctctccagaaa |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||| ||||||||||||||||||||||| || ||| |
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| T |
11629306 |
gccctaaatgtctgcagcatcattgaaagaaatggttcaacattaggcttgtaaccacaaataagcatctccttcagaatattagtgacctccccggaag |
11629207 |
T |
|
| Q |
105 |
acatcaagtccaaaacctcatgtgccttcattgaatcagttagtattgtgttcagttgattaactacttttctctgnnnnnnnncgaaaacactgtcctt |
204 |
Q |
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||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||| ||| ||| | | || ||||||||||||||| |
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| T |
11629206 |
acatcaagtccaaaacctcgtgtgcctttgtcgaatcagttagtattgtgttcagttgatcaacagcttctttttgttttttctcgaaaacactgtcctc |
11629107 |
T |
|
| Q |
205 |
gacatcgagagtggataa |
222 |
Q |
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|||||| ||||||||||| |
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| T |
11629106 |
gacatcaagagtggataa |
11629089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 11638079 - 11637912
Alignment:
| Q |
1 |
tgatgccctaaatgtctgcagcatcattgaaagaaatggttctatattaggcttgtagccacaaataagcatatccttcagaatattagtgacctctcca |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| || | || ||||||||||||||| |||||||| ||||| |||||||||||||| || || |
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| T |
11638079 |
tgatgccctaaatgtctgcagcatcattgaaagaaatggctcaacatcaggcttgtagccacagataagcatctccttgagaatattagtgacttcaccg |
11637980 |
T |
|
| Q |
101 |
gaaaacatcaagtccaaaacctcatgtgccttcattgaatcagttagtattgtgttcagttgattaac |
168 |
Q |
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||| |||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||| |||| |
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| T |
11637979 |
gaacacatcaagtccaaaacctcatgtgccttagttgaatctgttagtatcgtgttcagttgagtaac |
11637912 |
T |
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