View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14242_low_28 (Length: 234)
Name: NF14242_low_28
Description: NF14242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14242_low_28 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 23672298 - 23672530
Alignment:
| Q |
1 |
ttcgcataaagaaaattgtcagtgtcattttaataaaagtaagaagnnnnnnnnn-ctagacgttaatgtcttgtaactaactaataactattcattcag |
99 |
Q |
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| T |
23672298 |
ttcgcataaagaagattgtcagtgtcattttaataaaagtaagaaaaaaaaaaaaactagatgttaatgtcttgtaactaactaataactattcattcag |
23672397 |
T |
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| Q |
100 |
tttttacatatttaaactttgttagtgtctttgaaaaatagtactatccatctctacttgtgtcctatatgaaacaatatgactgatgatctactccttt |
199 |
Q |
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| T |
23672398 |
tttttacatatttaaact--gttagtgtctttgaaaaatagtactatccatctctacctgtgtcctatatgaaacaatatgactgatgatctactccatt |
23672495 |
T |
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| Q |
200 |
aaagtacgtatcaaaggtagaatgccaatcaaaca |
234 |
Q |
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| T |
23672496 |
aaagtacgtatcaaaggtagaatgccaatcaaaca |
23672530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 88 - 232
Target Start/End: Original strand, 23646386 - 23646527
Alignment:
| Q |
88 |
ctattcattcagtttttacatatttaaactttgttagtgtctttgaaaaatagtactatccatctctacttgtgtcctatatgaaacaatatgactgatg |
187 |
Q |
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| T |
23646386 |
ctattcattcagtgtttacatatctaaactttgttagtgtctttaaaaaatagtactgtccatttctacttgtgtcctatatgaaacaatatgtc---tg |
23646482 |
T |
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| Q |
188 |
atctactcctttaaagtacgtatcaaaggtagaatgccaatcaaa |
232 |
Q |
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| T |
23646483 |
atctactcctttacggtacgtatcaaaggtagaatgtcaatcaaa |
23646527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 129
Target Start/End: Original strand, 23614188 - 23614259
Alignment:
| Q |
56 |
ctagacgttaatgtcttgtaactaactaataactattcattcagtttttacatatttaaactttgttagtgtct |
129 |
Q |
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| T |
23614188 |
ctagatgttaatgtcttgtaattaataact--ctattcattcaatgtttacatatctaaactttgttagtgtct |
23614259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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