View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14242_low_3 (Length: 572)
Name: NF14242_low_3
Description: NF14242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14242_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 24 - 535
Target Start/End: Complemental strand, 1516445 - 1515934
Alignment:
| Q |
24 |
gtgctactttcttcttctgaatctgtttcactatcatcgtcagcagccaatgaaatcacaggctgagaattggaaatagctgactctgcagcagcaacag |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1516445 |
gtgctactttcttcttctgaatctgtttcactatcatcgtcagcagccaatgaaatcacaggctgagaattggaaatagctgactctgcagcagcaacag |
1516346 |
T |
|
| Q |
124 |
cctcaggtgtattaagatcggcaacaccaagcatcaaatcctgccaggaaacgtaatcgaaaaaatataatttaatattccactatttgcaagcaagtaa |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1516345 |
cctcaggtgtattaagatcggcaacaccaagcatcaaatcctgccaggaaacgtaatcgaaaaaatataatttaatattccactatttgcaagcaagtaa |
1516246 |
T |
|
| Q |
224 |
tatgacataaacacacaagtagaaggattattgatatgcaaagaaagataaaacattgactgaccatttcaataacttcagattcatttccagtcagccc |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1516245 |
tatgacataaacacacaagtagaaggattattgatatgcaaagaaagataaaacgttgactgaccatttcaataacttcagattcatttccagttagccc |
1516146 |
T |
|
| Q |
324 |
ttcaatatcatatttctctggatgttcctacannnnnnnagaattggagatataagaaaataggaaagaagtaaaaattatatcttcaactagaaagagt |
423 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1516145 |
ttcaatatcatatttctctggatgttcctacatttttttagaattggagatataagaaaataggaaagaagtaaaaattatatcttcaactagaaagagt |
1516046 |
T |
|
| Q |
424 |
tttaacctttgcatcatgttccagctgcttatttgcttctgacatcactcctaagaagtctttaaccttccctaatactgcatcaataaacaaagtattg |
523 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1516045 |
ttaaacctttgcatcatgttccagctgcttatttgcttctgacatcactcctaagaagtctttaaccttccctaatactgcatcaataaacaaagtattg |
1515946 |
T |
|
| Q |
524 |
tcaggtcagggt |
535 |
Q |
| |
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|||||||||||| |
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| T |
1515945 |
tcaggtcagggt |
1515934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 29 - 170
Target Start/End: Original strand, 36613548 - 36613686
Alignment:
| Q |
29 |
actttcttcttctgaatctgtttcactatcatcgtcagcagccaatgaaatcacaggctgagaattggaaatagctgactctgcagcagcaacagcctca |
128 |
Q |
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||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| || |||||| ||||||||||||||| || |||||||| |
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| T |
36613548 |
actttcttcttctgaatctatttcactatcatc---agcagccaatgaaatcacaggctgacaactggaaacagctgactctgcagctgccacagcctct |
36613644 |
T |
|
| Q |
129 |
ggtgtattaagatcggcaacaccaagcatcaaatcctgccag |
170 |
Q |
| |
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| T |
36613645 |
ggtgtatgaagatcagcaacaccaagcatcaaatcctgccag |
36613686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 270 - 506
Target Start/End: Original strand, 36613768 - 36614023
Alignment:
| Q |
270 |
gataaaacattgactgaccatttcaataacttcagattcatttccagtcagcccttcaatatcatatttctctggatgttcctacannnnnnna--gaat |
367 |
Q |
| |
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|||| |||||||||| ||||||||||||||||| ||||||||||| || ||| |||||| |||||||||||||||||| ||||||| |||| |
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| T |
36613768 |
gatagaacattgactaaccatttcaataacttcggattcatttcccgttagctcttcaaaatcatatttctctggatggtcctacatttgttttttgaat |
36613867 |
T |
|
| Q |
368 |
tggagatataagaaaataggaaagaa---------------gtaaaaattatatcttcaactagaaag--agttttaacctttgcatcatgttccagctg |
450 |
Q |
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||||| |||||| ||||||| || || ||||||||||||||||||| |||||| || |||||||||||||||||| |||| | | |
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| T |
36613868 |
tggaggtataaggaaatagggaaaaaaatatctgcaaagtggtaaaaattatatcttcaattagaaatcaagctttaacctttgcatcatgctccaaccg |
36613967 |
T |
|
| Q |
451 |
cttatttgcttctgacatcactcctaagaagtctttaaccttccctaatactgcat |
506 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
36613968 |
cttatttgcttctgacatcactcctaggaagtctttaaccttccctaaaactgcat |
36614023 |
T |
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