View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14242_low_32 (Length: 218)

Name: NF14242_low_32
Description: NF14242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14242_low_32
NF14242_low_32
[»] chr1 (3 HSPs)
chr1 (29-154)||(23679110-23679237)
chr1 (146-200)||(23672507-23672561)
chr1 (110-162)||(23747087-23747139)


Alignment Details
Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 29 - 154
Target Start/End: Complemental strand, 23679237 - 23679110
Alignment:
Q  29 ttctttacatatgatacttgtgtcatctaaacatattgctttggtatgataattgcagcatatttcagttgacaatgtatct--ctctattggtttatag 126  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  23679237 ttctttacatatgatacttgtgtcatctaaacatattgctttgatatgataattgcagcatatttcagttgacaatgtatctctctctattggtttatag 23679138  T
Q  127 aagattttgtgagatctaatacattctg 154  Q
    ||||||||||||||||||||||||||||    
T  23679137 aagattttgtgagatctaatacattctg 23679110  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 23672561 - 23672507
Alignment:
Q  146 tacattctgaggttgtagtcattactcaaattgtttgattggcattctacctttg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23672561 tacattctgaggttgtagtcattactcaaattgtttgattggcattctacctttg 23672507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 23747139 - 23747087
Alignment:
Q  110 tctctattggtttatagaagattttgtgagatctaatacattctgaggttgta 162  Q
    |||||||||||| |||||||||| ||||||||| | |||||| ||| ||||||    
T  23747139 tctctattggttcatagaagattctgtgagatccagtacattatgatgttgta 23747087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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