View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14242_low_5 (Length: 548)
Name: NF14242_low_5
Description: NF14242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14242_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 33 - 400
Target Start/End: Complemental strand, 3950528 - 3950161
Alignment:
| Q |
33 |
agattttgtaatcatttttcatctcttcatttagagagatagaggagatcaattttcaatttattttgacatgtttaggtgatgtggcaggaattgattt |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3950528 |
agattttgtaatcatttttcatctcttcatttagagagatagaggagatcaattttcaatttattttgacatgtttaggtgatgtggcaggaattgattt |
3950429 |
T |
|
| Q |
133 |
tgcctttaaaattaattataacttgactcaaaacgtcatttttgtactaaacataaatcacttcatacaactcacttataagtaaacccaattttacaga |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3950428 |
tgcctttaaaattaattataacttgactcaaaacgtcatttttgtactaaacataaatcacttcatacaactcacttacaagtaaacccaattttacaga |
3950329 |
T |
|
| Q |
233 |
ataaattcattcaaaatcgttgttgtcactgcaaaactacaaacacactgaaaggatccaaattcatggttggatatggcgatgaatggggataattccc |
332 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3950328 |
ataaattcattcaaaatcattgttgtcactgcaaaactacaaacacactgaaaggatccaaattcatggttggatatggcgatgaatggggataattccc |
3950229 |
T |
|
| Q |
333 |
acagaactttgaaataaaaatcatttaatnnnnnnntttcatcaaaattaacacaaaactcaattagt |
400 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3950228 |
acagaactttgcaataaaaatcatttaagagaaaaaattcatcaaaattaacacaaaactcaattagt |
3950161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 248
Target Start/End: Complemental strand, 25026159 - 25026127
Alignment:
| Q |
216 |
aaacccaattttacagaataaattcattcaaaa |
248 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
|
|
| T |
25026159 |
aaacccaattttacagaatcaattcattcaaaa |
25026127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University