View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14242_low_6 (Length: 514)
Name: NF14242_low_6
Description: NF14242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14242_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 501
Target Start/End: Original strand, 38581351 - 38581869
Alignment:
| Q |
1 |
aaatcaactttgatgtttgttcgagtatatatggatggagtattgaaactcaccatgtgttgtgagataggaaaagggaatcacatatcacccttacagg |
100 |
Q |
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|||||||| |||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38581351 |
aaatcaacattgatgtttgttggaatatatatgtatggagtattgaaactcaccatgtgttgtgagataggaaaagggaatcacatatcacccttacagg |
38581450 |
T |
|
| Q |
101 |
tctcctgtatgcaaggaatggagnnnnnnntcctcaaaacgtgcttatttgttttctcttgctcttttattttaataacctttcaattttggagggggtg |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38581451 |
tctcctgtatgcaaggaatggagccccccctcctcaaaacgtgcttatttgttttctcttgctcttttattttaataacctttcaattttggagggggtg |
38581550 |
T |
|
| Q |
201 |
tattttattaatgca-----------------cgcacagtgccaaaaaattatagggacacaaaaagccaacaa-gtaacattgagggaatggaaccctt |
282 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38581551 |
tattttattaatgcagatatttggttaatacacgcacagtgccaaaaaattatagggacacaaaaagccaacaacgtaacattgagggaatggaaccctt |
38581650 |
T |
|
| Q |
283 |
tgtgttctaatttaacttggatcctgtaatcgaagcaaaaagtgttgtcattttcagggaggacagagcaggagacattgatttgaacctaaaatcacaa |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38581651 |
tgtgttctaatttaacttggatcctgtaatcgaagcaaaaagtgttgtcattttcagggaggacagagcaggagacattgatttgaacctaaaatcacaa |
38581750 |
T |
|
| Q |
383 |
caattgtttttctttgtctttgagaaatatacaccctcttgcaaattacttaactccctccctataaaaagacatcaactagaccatatcttatacaact |
482 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38581751 |
caattgtttttctttgtctttgagaaatatacaccctcttgcaaattacttaactccctccctataaaaagacatcagctagaccatatcttatacaact |
38581850 |
T |
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| Q |
483 |
tcaaaaccatatactaaat |
501 |
Q |
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||||||||||||||||||| |
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| T |
38581851 |
tcaaaaccatatactaaat |
38581869 |
T |
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