View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14242_low_8 (Length: 470)
Name: NF14242_low_8
Description: NF14242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14242_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 19 - 451
Target Start/End: Complemental strand, 44038526 - 44038084
Alignment:
| Q |
19 |
gataaaactcttactcaaaacttatagacatttttatggttaaatttaaacactgtacaactaattaagctggaaggtattcataccatcttagtgtgtg |
118 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
44038526 |
gataaaactcttactcaaaacttataaacatttttatggttaaattcaaacactgtacaactaattaagctggaaggtattcataccatcttagtgtctg |
44038427 |
T |
|
| Q |
119 |
tttagtcaaatatttctggttgcttgacctctttttctaattatcattgaaaattattttacnnnnnnnnn-ggtgctaatttagtctattaatttattg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
44038426 |
tttagtcaaatatttctggttgcttgacctctttttctaat-atcattgaaaattattttacttttttttttggtgctaatttagtctattaattttttg |
44038328 |
T |
|
| Q |
218 |
gtataattgtatttttcgtnnnnnnntatttatcatgttcacagaaaaataatcaatgcatttgacaattcaaagagagtcttataaaaggaataaagag |
317 |
Q |
| |
|
||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44038327 |
gtataattgtatttttcgtcccctcctatttatcatttccacagaaaaataatcaatgcatttgacaattcaaagagagtcttataaaaggaataaagag |
44038228 |
T |
|
| Q |
318 |
aaactcaaacgaattttatatttaacgacggaggtagtatatgttaatcaaatgattattgaaatgg----------ttagttaaagatgaattgtttga |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44038227 |
aaactcaaacgaattttatatttaacgacggaggtagtatatgttaatcaaatgattattgaaatggttaataaacattagttaaagatgaattgtttga |
44038128 |
T |
|
| Q |
408 |
gagaaaacaaattcaaactctaaatgaaacaatcattagttata |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44038127 |
gagaaaacaaattcaaactctaaatgaaacaatcattagttata |
44038084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University