View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14243_high_1 (Length: 516)
Name: NF14243_high_1
Description: NF14243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14243_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 448; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Complemental strand, 12014743 - 12014244
Alignment:
| Q |
1 |
tcccgtggagtatatgtatttgcctccaagtttgctgatccaccgtccgatcaagacttttggaataagtggcgtgaatttgaggttcaacgtggaaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12014743 |
tcccgtggagtatatgtatttgcctccaagtttgctcatccacggtccgatcaagacttttggaataagtggcgtgaatttgaggttcaacgtggaaatg |
12014644 |
T |
|
| Q |
101 |
aagacacctttagagaaatgcttcgaattaaaaggagtgtctctgcaagctacatccaggttactttaatgtttcaattttcactttcctgatcattatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12014643 |
aagacacctttagagaaatgcttcgaattaaaaggagtgtctctgcaagctacatccaggttactttaatgtttcaagtttcactttcctgatcattatc |
12014544 |
T |
|
| Q |
201 |
cttgatttccttgcgtttattctgacatttgttttannnnnnnnacagacacattttatattgccgatgcagaaggatcaaactggcaaagcggtgacaa |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
12014543 |
cttgatttccttgcatttattctgacatttgttttattttttttacagacacattttatattgccgatgcagaaggatcaaactgacaaagcggtgacaa |
12014444 |
T |
|
| Q |
301 |
tagagagaaaagttgggtttgcaagtgccggagcgataaaaactaaagcaaatcatgaggaattcgagttaccagaagaaaacgactttgacgataagat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12014443 |
tagagagaaaagttgggtttgcaagtgcctgagcgataaaaactaaagcaaatcatgaggaattcgagttaccagaagaaaacgactttgatgataagat |
12014344 |
T |
|
| Q |
401 |
tgagattgcacacaaagtcgtcccttctactgtttttggcagtttgattagaaagagagacgagaatgaaaataatggagaagtggatggtgatgcaaaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12014343 |
tgagattgcacacaaagtcgtcccttctactgtttttggcagtttgattagaaagagagacgagaatgaaaataatggagaagtggatggtgatgcaaaa |
12014244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 2 - 207
Target Start/End: Original strand, 3031515 - 3031719
Alignment:
| Q |
2 |
cccgtggagtatatgtatttgcctccaagtttgctgatccaccgtccgatcaagacttttggaataagtggcgtgaatttgaggttcaacgtggaaatga |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||| |||| ||||||||||||| | |||| ||||||||||||||||| ||||||||| |
|
|
| T |
3031515 |
cccgtggagtatatgtatttgcctccaagtttgctgatccgcggtctgatccagacttttggaatgattggcatgaatttgaggttcaacatggaaatga |
3031614 |
T |
|
| Q |
102 |
agacacctttagagaaatgcttcgaattaaaaggagtgtctctgcaagctacatccaggttactttaatgtttcaattttcactttcctgatcattatcc |
201 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||| ||||||| | ||||| |
|
|
| T |
3031615 |
ggacacttttagagaaatgcttcgaattaaaaggagtgtctctgcaagctatagccaggttactataatgtttcaattttcac-ttcctgagccttatca |
3031713 |
T |
|
| Q |
202 |
ttgatt |
207 |
Q |
| |
|
|||||| |
|
|
| T |
3031714 |
ttgatt |
3031719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 330 - 477
Target Start/End: Original strand, 3031964 - 3032114
Alignment:
| Q |
330 |
ggagcgataaaaactaaagcaaatcatgaggaattcgagttaccagaagaaaacgactttga---cgataagattgagattgcacacaaagtcgtccctt |
426 |
Q |
| |
|
|||| |||||||||||| || || ||||| ||| | ||||||||||||||||| |||| ||| |||| | |||||||||||||| |||| ||||||| |
|
|
| T |
3031964 |
ggagggataaaaactaatgcgaaccatgaagaaattgagttaccagaagaaaatgactctgatgacgatgatattgagattgcacaaaaagatgtccctt |
3032063 |
T |
|
| Q |
427 |
ctactgtttttggcagtttgattagaaagagagacgagaatgaaaataatg |
477 |
Q |
| |
|
|| ||||||||||| ||||| ||||||| ||||| |||| ||||||||||| |
|
|
| T |
3032064 |
ctgctgtttttggcggtttggttagaaaaagagatgagattgaaaataatg |
3032114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 424 - 496
Target Start/End: Complemental strand, 11993359 - 11993286
Alignment:
| Q |
424 |
cttctactgtttttggca-gtttgattagaaagagagacgagaatgaaaataatggagaagtggatggtgatgc |
496 |
Q |
| |
|
|||||||||||||||| | || ||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
11993359 |
cttctactgtttttggaaagtctgattagaaagagagacgattatgaaaataatggagaagtagatggtgatgc |
11993286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 328
Target Start/End: Original strand, 3031900 - 3031941
Alignment:
| Q |
287 |
caaagcggtgacaatagagagaaaagttgggtttgcaagtgc |
328 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||| |||||| |
|
|
| T |
3031900 |
caaagcagtgacaaaagagagaaaagttgggtttgtaagtgc |
3031941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University