View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14243_high_14 (Length: 251)
Name: NF14243_high_14
Description: NF14243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14243_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 24509397 - 24509168
Alignment:
| Q |
1 |
gttcaaatttttgttggtagcattagtttgataaaatccgccagggggatttagtactgtttgataggtcgctgttgcaacaagggtcgcaacaatcaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
24509397 |
gttcaaatttttgttggtagcattagtttgataaaatccgccagggggatttagtactgtttgataggtcgctgttgcaacgagggtcgcaacaatcaac |
24509298 |
T |
|
| Q |
101 |
caagtgttgcgttgctcctctaatatttcacttctaaagcgactaacataaattgtcactttattcataattgtggtatctgatcttagttgatttgcaa |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24509297 |
caagtgctgcgttgctcctctaatatttcacttctaaagcgactaacataaattgtcactttattcataattgtggtatctgatcttagttgatttgcaa |
24509198 |
T |
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| Q |
201 |
gtgagggagcatcgacgacttgttcaccgt |
230 |
Q |
| |
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|| |||||||||||||||||| |||||||| |
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| T |
24509197 |
gtaagggagcatcgacgacttcttcaccgt |
24509168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 142
Target Start/End: Complemental strand, 27714345 - 27714274
Alignment:
| Q |
71 |
gctgttgcaacaagggtcgcaacaatcaaccaagtgttgcgttgctcctctaatatttcacttctaaagcga |
142 |
Q |
| |
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|||||||||||||| |||||||| |||| |||||||||||||||||||||||||| ||| |||||| |||| |
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| T |
27714345 |
gctgttgcaacaagagtcgcaactatcatccaagtgttgcgttgctcctctaatacatcatttctaatgcga |
27714274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 159
Target Start/End: Complemental strand, 30648930 - 30648800
Alignment:
| Q |
29 |
tgataaaatccgccagggggatttagtactgtttgataggtcgctgttgcaacaagggtcgcaacaatcaaccaagtgttgcgttgctcctctaatattt |
128 |
Q |
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| T |
30648930 |
tgataaattccaccagggggactcaatcctgattgatagatggcagtcgcaacaagagtcgcaactatcaaccaagtgttacgttgctcctctgatatat |
30648831 |
T |
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| Q |
129 |
cacttctaaagcgactaacataaattgtcac |
159 |
Q |
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| | ||||| |||| | | |||||||||||| |
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| T |
30648830 |
ctcctctaatgcgatttatataaattgtcac |
30648800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 29552861 - 29552745
Alignment:
| Q |
1 |
gttcaaatttttgttggtagcattagtttgataaaatccgccagggggatttagtactgtttgataggtcgctgttgcaacaagggtcgcaacaatcaac |
100 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| ||| ||||||||| ||||||||| ||||||||| || || ||||||||| ||||| |||||| |
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| T |
29552861 |
gttcaaatttttgtcactagcattaacctgataaactccaccagggggacttagtactgattgataggtggcagtcacaacaagggctgcaactatcaac |
29552762 |
T |
|
| Q |
101 |
caagtgttgcgttgctc |
117 |
Q |
| |
|
|||||| |||||||| |
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| T |
29552761 |
atagtgttacgttgctc |
29552745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 26089232 - 26089181
Alignment:
| Q |
69 |
tcgctgttgcaacaagggtcgcaacaatcaaccaagtgttgcgttgctcctc |
120 |
Q |
| |
|
|||| ||||||||||| |||||||| ||||||||| |||| ||||||||||| |
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|
| T |
26089232 |
tcgcagttgcaacaagagtcgcaactatcaaccaactgttacgttgctcctc |
26089181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 4819923 - 4819858
Alignment:
| Q |
61 |
ttgataggtcgctgttgcaacaagggtcgcaacaatcaaccaagtgttgcgttgctcctctaatat |
126 |
Q |
| |
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|||| |||| || ||||||||||| |||||||| ||||||||||||||||||||||||||| |||| |
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| T |
4819923 |
ttgaaaggtggcagttgcaacaagagtcgcaactatcaaccaagtgttgcgttgctcctctgatat |
4819858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 17292707 - 17292762
Alignment:
| Q |
61 |
ttgataggtcgctgttgcaacaagggtcgcaacaatcaaccaagtgttgcgttgct |
116 |
Q |
| |
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||||||||| |||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
17292707 |
ttgataggtggctgttgcaacaagagtcgcaattatcaaccaagtgttgcgttgct |
17292762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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