View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14243_high_16 (Length: 244)

Name: NF14243_high_16
Description: NF14243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14243_high_16
NF14243_high_16
[»] chr5 (1 HSPs)
chr5 (16-227)||(13717490-13717701)
[»] chr8 (1 HSPs)
chr8 (17-173)||(12590087-12590240)
[»] chr6 (20 HSPs)
chr6 (17-225)||(29727633-29727838)
chr6 (17-111)||(28490170-28490263)
chr6 (17-111)||(29802580-29802673)
chr6 (22-173)||(29469558-29469706)
chr6 (46-108)||(25581131-25581193)
chr6 (46-108)||(26057331-26057393)
chr6 (46-108)||(26077301-26077363)
chr6 (50-108)||(27215861-27215919)
chr6 (46-108)||(27426323-27426385)
chr6 (46-108)||(27530015-27530077)
chr6 (17-225)||(29759129-29759334)
chr6 (46-108)||(25484468-25484530)
chr6 (46-108)||(25512300-25512362)
chr6 (46-108)||(26144277-26144339)
chr6 (17-111)||(29673692-29673785)
chr6 (22-111)||(28479057-28479145)
chr6 (22-111)||(29695074-29695162)
chr6 (22-111)||(29791512-29791600)
chr6 (46-102)||(26885482-26885538)
chr6 (80-108)||(27609865-27609893)
[»] chr3 (1 HSPs)
chr3 (17-111)||(615202-615295)
[»] scaffold0012 (2 HSPs)
scaffold0012 (17-111)||(238548-238641)
scaffold0012 (47-111)||(211833-211897)
[»] scaffold0003 (1 HSPs)
scaffold0003 (46-108)||(60978-61040)
[»] chr4 (1 HSPs)
chr4 (46-108)||(18075170-18075232)
[»] chr1 (2 HSPs)
chr1 (44-102)||(28132210-28132268)
chr1 (46-111)||(5922180-5922245)


Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 13717701 - 13717490
Alignment:
Q  16 ataatttgatctttcatgatatcaccatttatgagcatgaagtatttctttgacctttgtcgatttatatcctttgaagcaacaagcaatgtcaagnnnn 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  13717701 ataatttgatctttcatgatatcaccatttatgagcatgaagtatttctttgacctttgtcgatttatatcctttgaagcaacaagcaatgtcaagaaaa 13717602  T
Q  116 nnncatacttctcttcttcctgtaaagcatcgaagctcatttgaagtattgtttggattttctaatcatgaattttttcgtaacaatctagtgtatcatt 215  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13717601 aaacatacttctcttcttcctgtaaagcatcgaagctcatttgaagtattgtttggattttctaatcatgaattttttcgtaacaatctagtgtatcatt 13717502  T
Q  216 aaattgttcttt 227  Q
    ||||||||||||    
T  13717501 aaattgttcttt 13717490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 12590240 - 12590087
Alignment:
Q  17 taatttgatctttcatgatatcaccatttatgagcatgaagtatttctttgacctttgtcgatttatatcctttgaagcaacaagcaatgtcaagnnnnn 116  Q
    |||| ||||| ||||||||||||||||  |||||||||||||||||||| |||| ||||| ||||  |||||||||||||||||||||| |||||         
T  12590240 taatgtgatcattcatgatatcaccatg-atgagcatgaagtatttcttcgacccttgtcaatttccatcctttgaagcaacaagcaatatcaag--aaa 12590144  T
Q  117 nncatacttctcttcttcctgtaaagcatcgaagctcatttgaagtattgtttggat 173  Q
      || |||||||||||||||| |||||||| ||||||| ||| ||| ||||||||||    
T  12590143 aacagacttctcttcttcctgcaaagcatcaaagctcagttgtagtgttgtttggat 12590087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 29727633 - 29727838
Alignment:
Q  17 taatttgatctttcatgatatcaccatttatgagcatgaagtatttctttgacctttgtcgatttatatcctttgaagcaacaagcaatgtcaagnnnnn 116  Q
    |||| |||||||||||| |||||||||  |||| ||||||||||||||| |||| ||||  ||||  ||||||||||||||||||||||||||||         
T  29727633 taatgtgatctttcatgttatcaccatg-atgaacatgaagtatttcttcgacccttgttaatttccatcctttgaagcaacaagcaatgtcaag--aaa 29727729  T
Q  117 nncatacttctcttcttcctgtaaagcatcgaagctcatttgaagtattgtttggattttctaatcatgaattttttcgtaacaatctagtgtatcatta 216  Q
      || |||||||||| ||||  | |||||| ||||||| ||| ||| |  ||||||| || | || | ||||||||||||||| |||||||| ||| |||    
T  29727730 aacaaacttctcttcgtcctccagagcatcaaagctcacttgtagtgtcatttggatctttttatgaggaattttttcgtaacgatctagtgcatcttta 29727829  T
Q  217 aattgttct 225  Q
     ||||||||    
T  29727830 cattgttct 29727838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 28490170 - 28490263
Alignment:
Q  17 taatttgatctttcatgatatcaccatttatgagcatgaagtatttctttgacctttgtcgatttatatcctttgaagcaacaagcaatgtcaag 111  Q
    |||| ||||||||||||||||||||||  ||| |||||||||||||||| |||  || || ||||  ||||||||||||||||||||||||||||    
T  28490170 taatgtgatctttcatgatatcaccatg-atgggcatgaagtatttcttcgactcttttcaatttccatcctttgaagcaacaagcaatgtcaag 28490263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 29802580 - 29802673
Alignment:
Q  17 taatttgatctttcatgatatcaccatttatgagcatgaagtatttctttgacctttgtcgatttatatcctttgaagcaacaagcaatgtcaag 111  Q
    |||| ||||||||||||||||||||||  ||| |||||||||||||||| |||  || || ||||  ||||||||||||||||||||||||||||    
T  29802580 taatgtgatctttcatgatatcaccatg-atgggcatgaagtatttcttcgactcttttcaatttccatcctttgaagcaacaagcaatgtcaag 29802673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 173
Target Start/End: Complemental strand, 29469706 - 29469558
Alignment:
Q  22 tgatctttcatgatatcaccatttatgagcatgaagtatttctttgacctttgtcgatttatatcctttgaagcaacaagcaatgtcaagnnnnnnncat 121  Q
    |||||||||||||||| | |||  |||||||| |||||||| ||  ||| ||||| ||||||||||||||||||| || |||||||||||       ||     
T  29469706 tgatctttcatgatattatcata-atgagcattaagtatttgttctacccttgtccatttatatcctttgaagcagcaggcaatgtcaag--aaaaacag 29469610  T
Q  122 acttctcttcttcctgtaaagcatcgaagctcatttgaagtattgtttggat 173  Q
    |||||||||||||||| |||||||| ||||| | ||| ||||| ||||||||    
T  29469609 acttctcttcttcctgcaaagcatcaaagctaagttgtagtatcgtttggat 29469558  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 25581193 - 25581131
Alignment:
Q  46 atgagcatgaagtatttctttgacctttgtcgatttatatcctttgaagcaacaagcaatgtc 108  Q
    ||||||||||||||||| ||| ||||||||| ||||| | |||||||||||||||||||||||    
T  25581193 atgagcatgaagtatttttttaacctttgtccatttacaccctttgaagcaacaagcaatgtc 25581131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 26057393 - 26057331
Alignment:
Q  46 atgagcatgaagtatttctttgacctttgtcgatttatatcctttgaagcaacaagcaatgtc 108  Q
    ||||||||||||||||| ||| ||||||||| ||||| | |||||||||||||||||||||||    
T  26057393 atgagcatgaagtatttttttaacctttgtccatttacaccctttgaagcaacaagcaatgtc 26057331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 26077363 - 26077301
Alignment:
Q  46 atgagcatgaagtatttctttgacctttgtcgatttatatcctttgaagcaacaagcaatgtc 108  Q
    ||||||||||||||||| ||| ||||||||| ||||| | |||||||||||||||||||||||    
T  26077363 atgagcatgaagtatttttttaacctttgtccatttacaccctttgaagcaacaagcaatgtc 26077301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 27215919 - 27215861
Alignment:
Q  50 gcatgaagtatttctttgacctttgtcgatttatatcctttgaagcaacaagcaatgtc 108  Q
    ||||||||||| ||||||||||||||| ||||| | |||||||||||||||||||||||    
T  27215919 gcatgaagtatatctttgacctttgtccatttacaccctttgaagcaacaagcaatgtc 27215861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 27426323 - 27426385
Alignment:
Q  46 atgagcatgaagtatttctttgacctttgtcgatttatatcctttgaagcaacaagcaatgtc 108  Q
    ||||||||||||||||||||||||||||  | ||||| | |||||||||||||||||||||||    
T  27426323 atgagcatgaagtatttctttgaccttttcccatttacaacctttgaagcaacaagcaatgtc 27426385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 27530015 - 27530077
Alignment:
Q  46 atgagcatgaagtatttctttgacctttgtcgatttatatcctttgaagcaacaagcaatgtc 108  Q
    |||||||||||||||||||||||||| || | ||||| | |||||||||||||||||||||||    
T  27530015 atgagcatgaagtatttctttgacctctggccatttacaccctttgaagcaacaagcaatgtc 27530077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 29759129 - 29759334
Alignment:
Q  17 taatttgatctttcatgatatcaccatttatgagcatgaagtatttctttgacctttgtcgatttatatcctttgaagcaacaagcaatgtcaagnnnnn 116  Q
    |||| |||||||||| ||| |||||||  ||| |||||||||||||| | |||| ||||  ||||  ||||||| ||||||||||||||||||||         
T  29759129 taatgtgatctttcacgatttcaccatg-atgggcatgaagtatttcatcgacccttgttaatttgcatcctttaaagcaacaagcaatgtcaag--aaa 29759225  T
Q  117 nncatacttctcttcttcctgtaaagcatcgaagctcatttgaagtattgtttggattttctaatcatgaattttttcgtaacaatctagtgtatcatta 216  Q
      || |||||||||| || |  |||||||| ||||| ||||| ||| |||||||||| || | || | ||| |||||| |||| |||||||| ||| |||    
T  29759226 aacaaacttctcttcgtcttccaaagcatcaaagctaatttgtagtgttgtttggatctttttatgaggaactttttcataacgatctagtgcatcttta 29759325  T
Q  217 aattgttct 225  Q
     ||||||||    
T  29759326 cattgttct 29759334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 25484530 - 25484468
Alignment:
Q  46 atgagcatgaagtatttctttgacctttgtcgatttatatcctttgaagcaacaagcaatgtc 108  Q
    ||||||||||||||||| ||| || |||||| ||||||| ||||||||| |||||||||||||    
T  25484530 atgagcatgaagtattttttttacttttgtccatttataccctttgaagtaacaagcaatgtc 25484468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 25512362 - 25512300
Alignment:
Q  46 atgagcatgaagtatttctttgacctttgtcgatttatatcctttgaagcaacaagcaatgtc 108  Q
    ||||||||||||||||| ||| || |||||| ||||||| ||||||||| |||||||||||||    
T  25512362 atgagcatgaagtattttttttacttttgtccatttataccctttgaagtaacaagcaatgtc 25512300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 26144339 - 26144277
Alignment:
Q  46 atgagcatgaagtatttctttgacctttgtcgatttatatcctttgaagcaacaagcaatgtc 108  Q
    ||||||||||||||||| ||| ||||||||| ||| | | |||||||||||||||||||||||    
T  26144339 atgagcatgaagtatttttttaacctttgtccattcacaccctttgaagcaacaagcaatgtc 26144277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 29673692 - 29673785
Alignment:
Q  17 taatttgatctttcatgatatcaccatttatgagcatgaagtatttctttgacctttgtcgatttatatcctttgaagcaacaagcaatgtcaag 111  Q
    ||||||| ||||||||| ||| |||||  |||||||||||||||| |||  ||| ||||| ||||  |||||||||||||||| |||||||||||    
T  29673692 taatttggtctttcatggtatgaccatg-atgagcatgaagtattccttcaaccattgtcaatttccatcctttgaagcaacatgcaatgtcaag 29673785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 28479057 - 28479145
Alignment:
Q  22 tgatctttcatgatatcaccatttatgagcatgaagtatttctttgacctttgtcgatttatatcctttgaagcaacaagcaatgtcaag 111  Q
    |||||||||||||||| |||||  |||||||||||||||||||| |||  || || | ||  ||||||||| ||||||||||||||||||    
T  28479057 tgatctttcatgatattaccata-atgagcatgaagtatttcttcgactcttatcaaattccatcctttgaggcaacaagcaatgtcaag 28479145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 29695074 - 29695162
Alignment:
Q  22 tgatctttcatgatatcaccatttatgagcatgaagtatttctttgacctttgtcgatttatatcctttgaagcaacaagcaatgtcaag 111  Q
    |||||||||||||||| |||||  ||||||||||||||||||||  ||  ||||| | ||  ||||||||| ||||||||||||||||||    
T  29695074 tgatctttcatgatattaccata-atgagcatgaagtatttcttctactcttgtcaaattccatcctttgaggcaacaagcaatgtcaag 29695162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 29791512 - 29791600
Alignment:
Q  22 tgatctttcatgatatcaccatttatgagcatgaagtatttctttgacctttgtcgatttatatcctttgaagcaacaagcaatgtcaag 111  Q
    |||||||||||||||| |||||  |||||||||||||||||||| |||  || || | ||  ||||||||| ||||||||||||||||||    
T  29791512 tgatctttcatgatattaccata-atgagcatgaagtatttcttcgactcttatcaaattccatcctttgaggcaacaagcaatgtcaag 29791600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 26885538 - 26885482
Alignment:
Q  46 atgagcatgaagtatttctttgacctttgtcgatttatatcctttgaagcaacaagc 102  Q
    ||||||||||||||| |||| ||||| |||| ||||| | |||||||||||||||||    
T  26885538 atgagcatgaagtatatcttcgacctctgtccatttacaccctttgaagcaacaagc 26885482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 108
Target Start/End: Original strand, 27609865 - 27609893
Alignment:
Q  80 ttatatcctttgaagcaacaagcaatgtc 108  Q
    |||||||||||||||||||||||||||||    
T  27609865 ttatatcctttgaagcaacaagcaatgtc 27609893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 615295 - 615202
Alignment:
Q  17 taatttgatctttcatgatatcaccatttatgagcatgaagtatttctttgacctttgtcgatttatatcctttgaagcaacaagcaatgtcaag 111  Q
    |||| ||||||||||||||||||||||  ||||||||||||||||||||  ||| ||||| ||||  ||||||||||||||||||||||||||||    
T  615295 taatgtgatctttcatgatatcaccata-atgagcatgaagtatttcttcaacccttgtcaatttccatcctttgaagcaacaagcaatgtcaag 615202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 238548 - 238641
Alignment:
Q  17 taatttgatctttcatgatatcaccatttatgagcatgaagtatttctttgacctttgtcgatttatatcctttgaagcaacaagcaatgtcaag 111  Q
    |||| |||||||||||||| |||||||  |||||||| ||| |||| || |||| ||||| |||||||||||||||||||||| |||||||||||    
T  238548 taatgtgatctttcatgatgtcaccatg-atgagcataaagaatttgttcgacccttgtcaatttatatcctttgaagcaacatgcaatgtcaag 238641  T

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Target: scaffold0012; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 211833 - 211897
Alignment:
Q  47 tgagcatgaagtatttctttgacctttgtcgatttatatcctttgaagcaacaagcaatgtcaag 111  Q
    ||||||||||||||||||| |||| ||||  ||||  ||||||||||||||||||||||||||||    
T  211833 tgagcatgaagtatttcttcgacccttgttaatttccatcctttgaagcaacaagcaatgtcaag 211897  T

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Target: scaffold0003 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 61040 - 60978
Alignment:
Q  46 atgagcatgaagtatttctttgacctttgtcgatttatatcctttgaagcaacaagcaatgtc 108  Q
    ||||||||||||||||||||||||||||  | ||||| | |||||||||||||||||||||||    
T  61040 atgagcatgaagtatttctttgaccttttcccatttacaacctttgaagcaacaagcaatgtc 60978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 18075232 - 18075170
Alignment:
Q  46 atgagcatgaagtatttctttgacctttgtcgatttatatcctttgaagcaacaagcaatgtc 108  Q
    ||||||||||||||||||||||||||||  | ||||| | |||||||||||||||||||||||    
T  18075232 atgagcatgaagtatttctttgaccttttcccatttacaacctttgaagcaacaagcaatgtc 18075170  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 28132210 - 28132268
Alignment:
Q  44 ttatgagcatgaagtatttctttgacctttgtcgatttatatcctttgaagcaacaagc 102  Q
    ||||||||||||||||| |||| |||| ||||| || |||| || ||||||||||||||    
T  28132210 ttatgagcatgaagtatctcttcgaccattgtcaatctataccccttgaagcaacaagc 28132268  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 5922180 - 5922245
Alignment:
Q  46 atgagcatgaagtatttctttgacctttgtcgatttatatcctttgaagcaacaagcaatgtcaag 111  Q
    |||||||||||| ||||  |||||  ||||| | | |||||||||||||||||||||||| |||||    
T  5922180 atgagcatgaagcattttattgacgattgtcaaatcatatcctttgaagcaacaagcaatatcaag 5922245  T

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