View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14243_high_3 (Length: 478)
Name: NF14243_high_3
Description: NF14243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14243_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Original strand, 9818256 - 9818691
Alignment:
| Q |
18 |
taaccctctttgtagggaaatggaaagttgaaaatgtattcgactacatgtatattatttagtacataataccattggtagggactgtaaccctcttggt |
117 |
Q |
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| T |
9818256 |
taaccctctttgtagggaaatggaaagttgaaaatgtattcgactacatgtatattatttagtacataataccattggtagggactgtaaccctcttggt |
9818355 |
T |
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| Q |
118 |
atggaaatgaaaagtaaaaaatgtattcaaatttcatatatatcagacactaaattaccaaagttacgtaatatcagttgctatgctacaggtggagatc |
217 |
Q |
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| T |
9818356 |
atggaaatggaaagttaaaaatgtattcaaatttcatatatatcagacactaaattaccaaagttacgtaatatcagttgctatgctacaggtggagatc |
9818455 |
T |
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| Q |
218 |
-------acaatctgttcattaccgtgttttgaacaaaataagagatgacgacgtttaaagtatctagtcgttgttttattttatccgcttctgttgtat |
310 |
Q |
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| T |
9818456 |
aacagcaacaatctgttcattaccgtgttttaaacaaaataagagatgacgatgtttaaagtatctagtcgttgttttattttatccgattctgttgtat |
9818555 |
T |
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| Q |
311 |
agagaccttagttataccacctttggtaaatatttgttcaattccatcaatagaaacagaattagctatgtaagaagattgctgagcaacatgattttcg |
410 |
Q |
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| T |
9818556 |
agaaaccttagttatgccacctttggtaaatatttgttcatttccatcaatagaaacagaatcagctatgcaagaagattcctgagcaacatgattttcg |
9818655 |
T |
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| Q |
411 |
gagatgatggaggatgaccatccccaattacttata |
446 |
Q |
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| T |
9818656 |
gagatgatggaggatgaccatccccaattacttata |
9818691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 55 - 259
Target Start/End: Complemental strand, 9855323 - 9855112
Alignment:
| Q |
55 |
attcgactacatgtatattatttagtacataataccattggtagggactgtaaccctcttggt----atggaaatgaaaagtaaaaaatgtattcaaatt |
150 |
Q |
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| T |
9855323 |
attcaactacatgtatattatt-agtacataatac-attagtagggattgtaatcctcttggtgataaaggagctgtaaagttaaa--tgtattcaaatt |
9855228 |
T |
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| Q |
151 |
tcatatatatcagacactaaattaccaaagttacgtaatatcagttgctatgctacaggtggagatc-------acaatctgttcattaccgtgttttga |
243 |
Q |
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| T |
9855227 |
tcatatatatcatataccaaattacaaaagttatgtaatatcagttgctattttacaggtggagatcgaatgcaacaatttgttcgttaccttgttttta |
9855128 |
T |
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| Q |
244 |
acaaaataagagatga |
259 |
Q |
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| T |
9855127 |
acaaaataagagatga |
9855112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 9818240 - 9818296
Alignment:
| Q |
89 |
ccattggtagggactgtaaccctcttggtatggaaatgaaaagtaaaaaatgtattc |
145 |
Q |
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| T |
9818240 |
ccattggtagggactgtaaccctctttgtagggaaatggaaagttgaaaatgtattc |
9818296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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