View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14243_high_4 (Length: 435)
Name: NF14243_high_4
Description: NF14243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14243_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 16 - 421
Target Start/End: Complemental strand, 51804219 - 51803814
Alignment:
| Q |
16 |
gtggaaacacttggaagcataagacacaagaacattgttaagttgtattgttgcttctcaagtttggattgtagcttgttggtttatgagtatatgccaa |
115 |
Q |
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| T |
51804219 |
gtggaaacacttggaagcataagacacaagaacattgttaagttgtattgttgcttctcaagtttggattgtagcttgttggtttatgagtatatgccaa |
51804120 |
T |
|
| Q |
116 |
atggtactttgtatgattctcttcataagggttggattcatttggattggcctacaaggtataggattgcacttggaattgctcagggtgttgcatacct |
215 |
Q |
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| T |
51804119 |
atggtactttgtatgattctcttcacaagggttggattcatttggattggcctacaaggtataggattgcacttggaattgctcagggtgttgcatacct |
51804020 |
T |
|
| Q |
216 |
tcaccatgatttggtttttcctattatccatagagatattaagtcaacaaatattctcttggatgaagattaccatcctaaggttgcagattttgggatt |
315 |
Q |
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| T |
51804019 |
tcaccatgatttggtttttcctattatccatagagatattaagtcaacaaatattctcttggatgaagattaccatcctaaggttgcagattttgggatt |
51803920 |
T |
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| Q |
316 |
gctaaggttttgcaggcaagaggagcaaaggattccacaaccacggttattgctggaacttatggttacctagccccaggtaaataaattctcaatctaa |
415 |
Q |
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| T |
51803919 |
gctaaggttttgcaggcaagaggagcaaaggattccacaaccacggtcattgctggaacttatggttacctagccccaggtaaataaattctcaatttaa |
51803820 |
T |
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| Q |
416 |
cctatt |
421 |
Q |
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| T |
51803819 |
cctatt |
51803814 |
T |
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Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 63 - 230
Target Start/End: Complemental strand, 36578673 - 36578512
Alignment:
| Q |
63 |
ttgttgcttctcaagtttggattgtagcttgttggttt----atgagtatatgccaaatggtactttgtatgattctcttcataagggttggattcattt |
158 |
Q |
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|||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| ||||| ||| | || |
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| T |
36578673 |
ttgttgcttctcaattttggattgtagcttgttggtttgtttatgagtacatgccaaatggtactttatatgattcacttcacaag----------agtt |
36578584 |
T |
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| Q |
159 |
ggattggcctacaaggtataggattgcacttggaattgctcagggtgttgcataccttcaccatgatttggt |
230 |
Q |
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| T |
36578583 |
ggatcgacctactaagtatagaatcgaacttggaattgattagggtcttgcataccttcaccatgatttggt |
36578512 |
T |
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