View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14243_high_5 (Length: 431)
Name: NF14243_high_5
Description: NF14243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14243_high_5 |
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| [»] scaffold0610 (1 HSPs) |
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| [»] scaffold0554 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 15 - 415
Target Start/End: Complemental strand, 43532768 - 43532367
Alignment:
| Q |
15 |
gattctacaacagccttgagaatagtccagatgctacatggtatagctgaggtatttgttttcactctttccattgagacatttacattcgttaaaggtt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43532768 |
gattctacaacagccttgagaatagtccagatgctacatgatatagctgaggtatttgttttcactctttccattgagacatttacattcattaaaggtt |
43532669 |
T |
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| Q |
115 |
ttaactcttccgtctactatgagcagctttcaacttctcttgaatcatctcgactttctgttgtatcttgaactatttctggttatcttctgattacctc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43532668 |
ttaactcttccgtctactatgagcagctttcaacttctcttgaatcatctcgactttctgttgtatcttgaactatttctggttatcttctgattacctc |
43532569 |
T |
|
| Q |
215 |
atatgattcaaaccaacataatggagttccccatttctatccattcaaaatcatcctaatttgatcatacaaataatatgaaggcttctaaggaaaactc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43532568 |
atatgattcaaaccaacataatggagttccccatttctatccattcaaaatcatcctaatttgatcatacaaataatatgaaggcttctaaggaaaactc |
43532469 |
T |
|
| Q |
315 |
aaaatcaaatnnnnnnncattaggccacattcaacag-nnnnnnnatgagtaagaatcgaacgctgtttttcagaattagcaacacttataagttatata |
413 |
Q |
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|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43532468 |
aaaatcaaataaaaaaacattaggccacattcaacagttttttttatgagtaagaatcgaacgctgtttttcagaattagcaacacttataagttatata |
43532369 |
T |
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| Q |
414 |
ca |
415 |
Q |
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|| |
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| T |
43532368 |
ca |
43532367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 14936538 - 14936586
Alignment:
| Q |
116 |
taactcttccgtctactatgagcagctttcaacttctcttgaatcatct |
164 |
Q |
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| T |
14936538 |
taactcttctgtctactctgagacgctttcatcttctcttgaatcatct |
14936586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 21674612 - 21674564
Alignment:
| Q |
116 |
taactcttccgtctactatgagcagctttcaacttctcttgaatcatct |
164 |
Q |
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||||||||| ||||||| |||| ||||||| ||||||||||||||||| |
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| T |
21674612 |
taactcttctgtctactttgagacgctttcatcttctcttgaatcatct |
21674564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0610 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0610
Description:
Target: scaffold0610; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 8964 - 8916
Alignment:
| Q |
116 |
taactcttccgtctactatgagcagctttcaacttctcttgaatcatct |
164 |
Q |
| |
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||||||||| ||||||| |||| ||||||| ||||||||||||||||| |
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| T |
8964 |
taactcttctgtctactctgagacgctttcatcttctcttgaatcatct |
8916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 3392 - 3440
Alignment:
| Q |
116 |
taactcttccgtctactatgagcagctttcaacttctcttgaatcatct |
164 |
Q |
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||||||||| ||||||| |||| ||||||| ||||||||||||||||| |
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| T |
3392 |
taactcttctgtctactctgagacgctttcatcttctcttgaatcatct |
3440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 25655549 - 25655597
Alignment:
| Q |
116 |
taactcttccgtctactatgagcagctttcaacttctcttgaatcatct |
164 |
Q |
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||||||||| ||||||| |||| ||||||| ||||||||||||||||| |
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| T |
25655549 |
taactcttctgtctactctgagacgctttcatcttctcttgaatcatct |
25655597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 17192925 - 17192973
Alignment:
| Q |
116 |
taactcttccgtctactatgagcagctttcaacttctcttgaatcatct |
164 |
Q |
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||||||||| ||||||| |||| ||||||| ||||||||||||||||| |
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| T |
17192925 |
taactcttctgtctactctgagacgctttcatcttctcttgaatcatct |
17192973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 25128480 - 25128528
Alignment:
| Q |
116 |
taactcttccgtctactatgagcagctttcaacttctcttgaatcatct |
164 |
Q |
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||||||||| ||||||| |||| ||||||| ||||||||||||||||| |
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| T |
25128480 |
taactcttctgtctactctgagatgctttcatcttctcttgaatcatct |
25128528 |
T |
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