View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14243_low_10 (Length: 377)
Name: NF14243_low_10
Description: NF14243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14243_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 13 - 359
Target Start/End: Complemental strand, 6805739 - 6805393
Alignment:
| Q |
13 |
attctgtatcaggtgaagaagttttggaaaatgggagaagttatagagaagcaagcaaatggttatcagagtatatgttatatcttcttgtaatgagacc |
112 |
Q |
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| T |
6805739 |
attctgtataaggtgaagaagttttggaaaatgggagaagttatagagaagcaagcaaatggttatcagagtatatgttatatcttcttgtaatgagacc |
6805640 |
T |
|
| Q |
113 |
gtcaatgttgcctaacgggattggtgagataagcttccaagacacacacgctgaggtaactgaatttgtgaaggatagacattctatacaagatgagaag |
212 |
Q |
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| T |
6805639 |
gtcaatgttgcctaacgggattggtgagataagcttccaagacacacgcgctgaggtaactgaatttgtgaaggatagacattctatacaagatgagaag |
6805540 |
T |
|
| Q |
213 |
caagtatctgaaatgctagacagagtgtgcaaatatgttgacagagttagtccttcaaaggtgaaaggtgatagaagcaaatctgttctatttgatgcat |
312 |
Q |
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| T |
6805539 |
caagtatctgaaatgctagacagagtgtgcaaatatgttgacagagttagtccttcaaaggtgaaaggtgatagaagcaaatatgttctatttgatgcat |
6805440 |
T |
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| Q |
313 |
tcaggttggctaaaaatgtaatggagataaaggatgatgaagaatgg |
359 |
Q |
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| T |
6805439 |
tcaagttggctaaaaatgtaatggagataaaggatgatgaagaatgg |
6805393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 50 - 352
Target Start/End: Complemental strand, 7327848 - 7327546
Alignment:
| Q |
50 |
aagttatagagaagcaagcaaatggttatcagagtatatgttatatcttcttgtaatgagaccgtcaatgttgcctaacgggattggtgagataagcttc |
149 |
Q |
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|||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || ||||||||||| || |||||||||||||| ||| |
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| T |
7327848 |
aagttataaagaagcaagcaaatgtttatcagagtatatgttatatcttcttgttatgagaccatctatgttgcctaatggaattggtgagataagattc |
7327749 |
T |
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| Q |
150 |
caagacacacacgctgaggtaactgaatttgtgaaggatagacattctatacaagatgagaagcaagtatctgaaatgctagacagagtgtgcaaatatg |
249 |
Q |
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||||| ||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| | | ||| ||| ||| |||| || | || |
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| T |
7327748 |
caagatacatgtgctgaggcaactgaatttgtgaaggataggcattctatacaagatgagaagcaagtgtgtagaatactacacaaagtgagccgagata |
7327649 |
T |
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| Q |
250 |
ttgacagagttagtccttcaaaggtgaaaggtgatagaagcaaatctgttctatttgatgcattcaggttggctaaaaatgtaatggagataaaggatga |
349 |
Q |
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| || | ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| | |||| |
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| T |
7327648 |
tcgataaagttagtccttcaaaggtgaaaggtgacagaagcaaatctgtactatttgatgcattcaggttggctaaaaatgtaagggagataaggaatga |
7327549 |
T |
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| Q |
350 |
tga |
352 |
Q |
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||| |
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| T |
7327548 |
tga |
7327546 |
T |
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