View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14243_low_11 (Length: 350)

Name: NF14243_low_11
Description: NF14243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14243_low_11
NF14243_low_11
[»] chr7 (2 HSPs)
chr7 (18-235)||(19892957-19893174)
chr7 (224-290)||(32620594-32620662)
[»] chr4 (7 HSPs)
chr4 (223-315)||(26784753-26784847)
chr4 (223-308)||(28177029-28177116)
chr4 (158-227)||(22619095-22619164)
chr4 (223-290)||(34388670-34388739)
chr4 (223-287)||(25490571-25490637)
chr4 (223-337)||(50623821-50623936)
chr4 (223-276)||(27865978-27866033)
[»] chr2 (2 HSPs)
chr2 (223-344)||(17563510-17563633)
chr2 (223-307)||(38778791-38778877)
[»] chr5 (4 HSPs)
chr5 (223-299)||(40555601-40555679)
chr5 (223-310)||(24514398-24514487)
chr5 (225-298)||(12089219-12089294)
chr5 (223-293)||(5156748-5156819)
[»] scaffold0009 (1 HSPs)
scaffold0009 (223-309)||(193544-193632)
[»] chr3 (4 HSPs)
chr3 (223-337)||(2910689-2910805)
chr3 (223-276)||(22271003-22271058)
chr3 (223-310)||(18196718-18196807)
chr3 (223-310)||(20521593-20521682)
[»] chr8 (2 HSPs)
chr8 (223-338)||(39312038-39312154)
chr8 (223-296)||(3490218-3490293)
[»] chr6 (2 HSPs)
chr6 (223-293)||(14158342-14158414)
chr6 (223-276)||(3807927-3807981)
[»] chr1 (1 HSPs)
chr1 (223-296)||(51243924-51243998)


Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 19893174 - 19892957
Alignment:
Q  18 tttcttgggttgtagtaaggcgatgggagtatggataacgaccggattgtgggatagcattcgttctttgatgataaatgcgacatattttgcttctttc 117  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  19893174 tttcttgggttgtagtaaggtgatgggggtatggataacgaccggattgtgggatagcattcgttctttgatgataaatgcggcagattttgcttctttc 19893075  T
Q  118 ttttttggtatttnnnnnnnnttgcagcaacaacatatagttgattttgttatgatgttatggtgtattaggaagagaagaaatgaaaaagtatgggagg 217  Q
    |||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  19893074 ttttttggtatttaagaaaaattgcagcaacaacatatagttgattttgttatgatgttatggtgtatttggaagagaagaaatgaaaaagtatgggagg 19892975  T
Q  218 atgtggaaaacaacaaat 235  Q
    ||||||||||||||||||    
T  19892974 atgtggaaaacaacaaat 19892957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 290
Target Start/End: Complemental strand, 32620662 - 32620594
Alignment:
Q  224 aaaacaacaaatttttgactt--aaaaagttgaacatacaactttttaacaattttcaaagcaaaattt 290  Q
    ||||||||||| |||||||||  |||||||||||||  | ||||||||||||||| |||  ||||||||    
T  32620662 aaaacaacaaacttttgacttccaaaaagttgaacacgctactttttaacaatttccaatacaaaattt 32620594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 223 - 315
Target Start/End: Original strand, 26784753 - 26784847
Alignment:
Q  223 gaaaacaacaaatttttgactt--aaaaagttgaacatacaactttttaacaattttcaaagcaaaatttctaaattagcctccttaactggtgc 315  Q
    |||||||||||| |||||||||  |||||||||||||||| ||||||||||||||| ||| |||||||||||||||||| |||||||||| ||||    
T  26784753 gaaaacaacaaacttttgacttttaaaaagttgaacataccactttttaacaatttccaatgcaaaatttctaaattagtctccttaactagtgc 26784847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 308
Target Start/End: Original strand, 28177029 - 28177116
Alignment:
Q  223 gaaaacaacaaatttttgac--ttaaaaagttgaacatacaactttttaacaattttcaaagcaaaatttctaaattagcctccttaa 308  Q
    |||||||||||| |||| ||  |||||||||||||||||| |||||||||||||||||||  |||||||| ||| |||| ||| ||||    
T  28177029 gaaaacaacaaacttttaacatttaaaaagttgaacataccactttttaacaattttcaatacaaaatttataatttagtctcgttaa 28177116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 22619095 - 22619164
Alignment:
Q  158 ttgattttgttatgatgttatggtgtattaggaagagaagaaatgaaaaagtatgggaggatgtggaaaa 227  Q
    |||||||||| |||||||| ||||||||   |||||||||||| ||||||||||||||||| || |||||    
T  22619095 ttgattttgtcatgatgttgtggtgtatatcgaagagaagaaacgaaaaagtatgggaggacgtagaaaa 22619164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 290
Target Start/End: Complemental strand, 34388739 - 34388670
Alignment:
Q  223 gaaaacaacaaatttttgactt--aaaaagttgaacatacaactttttaacaattttcaaagcaaaattt 290  Q
    ||||| |||||| |||||||||  |||||||| ||||||| ||||||||||||||| ||| |||||||||    
T  34388739 gaaaaaaacaaacttttgacttttaaaaagttaaacataccactttttaacaatttccaatgcaaaattt 34388670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 287
Target Start/End: Original strand, 25490571 - 25490637
Alignment:
Q  223 gaaaacaacaaatttttgactt--aaaaagttgaacatacaactttttaacaattttcaaagcaaaa 287  Q
    |||||||||||| |||||||||  ||||||||||||||||   |||||||||||| |||| ||||||    
T  25490571 gaaaacaacaaagttttgacttttaaaaagttgaacataccgttttttaacaattctcaatgcaaaa 25490637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 337
Target Start/End: Complemental strand, 50623936 - 50623821
Alignment:
Q  223 gaaaacaacaaatttttgactt--aaaaagttgaacatacaactttttaacaattttcaaagcaaaatttctaaattagcctccttaactggtgcactga 320  Q
    |||||||| ||| |||||||||  ||||| |||||||||  | ||||||||||||||||| | |||||||  | ||||| || |||||||  ||  |||     
T  50623936 gaaaacaataaagttttgacttttaaaaaattgaacatatcattttttaacaattttcaatgtaaaattttcatattagtct-cttaactaatgttctgg 50623838  T
Q  321 gggcactagttaacatt 337  Q
    |||||||||||||||||    
T  50623837 gggcactagttaacatt 50623821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 276
Target Start/End: Complemental strand, 27866033 - 27865978
Alignment:
Q  223 gaaaacaacaaatttttgactt--aaaaagttgaacatacaactttttaacaattt 276  Q
    |||||| ||||| |||||||||  |||||||| ||||||||| |||||||||||||    
T  27866033 gaaaaccacaaaattttgactttcaaaaagttaaacatacaattttttaacaattt 27865978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 223 - 344
Target Start/End: Complemental strand, 17563633 - 17563510
Alignment:
Q  223 gaaaacaacaaatttttgactt--aaaaagttgaacatacaactttttaacaattttcaaagcaaaatttctaaattagcctccttaactggtgcactga 320  Q
    ||||||||||||||||| | ||  |||||||||||||||| |||||||||||||||| || ||||||||| ||||||||  | ||||||| | ||  ||     
T  17563633 gaaaacaacaaattttttattttaaaaaagttgaacatactactttttaacaatttttaatgcaaaatttttaaattagttttcttaactagagccttgg 17563534  T
Q  321 gggcactagttaacattttcctat 344  Q
    |||||||||||| |||||||||||    
T  17563533 gggcactagttagcattttcctat 17563510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 223 - 307
Target Start/End: Original strand, 38778791 - 38778877
Alignment:
Q  223 gaaaacaacaaatttttgactt--aaaaagttgaacatacaactttttaacaattttcaaagcaaaatttctaaattagcctcctta 307  Q
    |||||||||||| |||||||||  |||||||||||||||||| |||||||| |||||||| ||||||||| |||||||| |||||||    
T  38778791 gaaaacaacaaacttttgacttttaaaaagttgaacatacaattttttaacgattttcaatgcaaaatttttaaattagtctcctta 38778877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 223 - 299
Target Start/End: Original strand, 40555601 - 40555679
Alignment:
Q  223 gaaaacaacaaatttttgactt--aaaaagttgaacatacaactttttaacaattttcaaagcaaaatttctaaattag 299  Q
    ||||| ||||||||||||||||  |||||||||||||||||| |||||||||||| |||| ||||||||||||||||||    
T  40555601 gaaaataacaaatttttgacttttaaaaagttgaacatacaattttttaacaattctcaatgcaaaatttctaaattag 40555679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 310
Target Start/End: Original strand, 24514398 - 24514487
Alignment:
Q  223 gaaaacaacaaatttttgactt--aaaaagttgaacatacaactttttaacaattttcaaagcaaaatttctaaattagcctccttaact 310  Q
    |||||||||||| |||||||||  ||||| || ||||||  ||||||||||||||||||| |||||||||||| |||||  |||||||||    
T  24514398 gaaaacaacaaaattttgacttttaaaaacttaaacatatcactttttaacaattttcaatgcaaaatttctatattagtatccttaact 24514487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 298
Target Start/End: Complemental strand, 12089294 - 12089219
Alignment:
Q  225 aaacaacaaatttttgactt--aaaaagttgaacatacaactttttaacaattttcaaagcaaaatttctaaatta 298  Q
    |||||||||| |||||||||  ||||| |||||||||||| ||||||||||||| ||| |||||||||||| ||||    
T  12089294 aaacaacaaacttttgacttttaaaaaattgaacatacaagtttttaacaatttccaatgcaaaatttctatatta 12089219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 293
Target Start/End: Original strand, 5156748 - 5156819
Alignment:
Q  223 gaaaacaacaaatttttgactt--aaaaagttgaacatacaactttttaacaattttcaaagcaaaatttcta 293  Q
    ||||||||||||  ||||||||  |||||||||||||||| | ||||||| ||||||||| ||||| ||||||    
T  5156748 gaaaacaacaaagctttgacttttaaaaagttgaacatacca-tttttaataattttcaatgcaaagtttcta 5156819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 223 - 309
Target Start/End: Original strand, 193544 - 193632
Alignment:
Q  223 gaaaacaacaaatttttgactt--aaaaagttgaacatacaactttttaacaattttcaaagcaaaatttctaaattagcctccttaac 309  Q
    |||||||||||| |||||||||  |||||||||||||||| | ||||| ||||||||||| | |||||||||||||||| |||||||||    
T  193544 gaaaacaacaaacttttgacttttaaaaagttgaacataccatttttttacaattttcaatgtaaaatttctaaattagtctccttaac 193632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 223 - 337
Target Start/End: Complemental strand, 2910805 - 2910689
Alignment:
Q  223 gaaaacaacaaatttttgact--taaaaagttgaacatacaactttttaacaattttcaaagcaaaatttctaaattagcctccttaactggtgcactga 320  Q
    |||||||||||| ||||||||  ||||||||||||||||  ||||||||||||||||||| ||||| ||| |  ||||| |||||||||| |||| |||     
T  2910805 gaaaacaacaaaattttgactcttaaaaagttgaacatagcactttttaacaattttcaatgcaaactttttttattagtctccttaactagtgccctgg 2910706  T
Q  321 gggcactagttaacatt 337  Q
    | |||| ||||||||||    
T  2910705 gagcaccagttaacatt 2910689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 223 - 276
Target Start/End: Original strand, 22271003 - 22271058
Alignment:
Q  223 gaaaacaacaaatttttgactt--aaaaagttgaacatacaactttttaacaattt 276  Q
    |||||||||||| |||||||||  |||||||||||||||| |||||||||||||||    
T  22271003 gaaaacaacaaacttttgacttttaaaaagttgaacataccactttttaacaattt 22271058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 310
Target Start/End: Complemental strand, 18196807 - 18196718
Alignment:
Q  223 gaaaacaacaaatttttgactt--aaaaagttgaacatacaactttttaacaattttcaaagcaaaatttctaaattagcctccttaact 310  Q
    |||||||||||| |||||||||  |||||||| ||||||| | ||||||||||||| ||| ||||||||  || || || ||||||||||    
T  18196807 gaaaacaacaaaattttgacttttaaaaagttaaacatactagtttttaacaatttccaatgcaaaattgttatatcagtctccttaact 18196718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 310
Target Start/End: Original strand, 20521593 - 20521682
Alignment:
Q  223 gaaaacaacaaatttttgactt--aaaaagttgaacatacaactttttaacaattttcaaagcaaaatttctaaattagcctccttaact 310  Q
    |||||||||||| |||||||||  |||||||||||||| | ||||||| ||||||| ||| ||||||||  || || || ||||||||||    
T  20521593 gaaaacaacaaagttttgacttttaaaaagttgaacattccacttttttacaatttccaatgcaaaattgatatatcagtctccttaact 20521682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 338
Target Start/End: Original strand, 39312038 - 39312154
Alignment:
Q  223 gaaaacaacaaatttttgactt--aaaaagttgaacatacaactttttaacaattttcaaagcaaaatttctaaattagcctccttaactggtgcactga 320  Q
    ||||||||||||||||| ||||  ||||||||| |||||| ||||||||| |||||| || ||||||||| ||| |||| |||||||||| |||| |  |    
T  39312038 gaaaacaacaaattttttacttttaaaaagttggacataccactttttaataattttaaatgcaaaatttttaatttagtctccttaactagtgc-ccca 39312136  T
Q  321 gggcactagttaacattt 338  Q
    | ||||||||||||||||    
T  39312137 gtgcactagttaacattt 39312154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 223 - 296
Target Start/End: Original strand, 3490218 - 3490293
Alignment:
Q  223 gaaaacaacaaatttttgactt--aaaaagttgaacatacaactttttaacaattttcaaagcaaaatttctaaat 296  Q
    |||||||||||| |||||||||  |||||||| ||||||| ||||||||||||||||||| |||||||| ||||||    
T  3490218 gaaaacaacaaacttttgacttttaaaaagttaaacataccactttttaacaattttcaatgcaaaattcctaaat 3490293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 293
Target Start/End: Original strand, 14158342 - 14158414
Alignment:
Q  223 gaaaacaacaaatttttgactt--aaaaagttgaacatacaactttttaacaattttcaaagcaaaatttcta 293  Q
    |||||||| ||| |||||||||  |||||||||||||||  ||||||||||||||||||| ||||| ||||||    
T  14158342 gaaaacaataaaattttgacttttaaaaagttgaacataacactttttaacaattttcaatgcaaactttcta 14158414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 276
Target Start/End: Complemental strand, 3807981 - 3807927
Alignment:
Q  223 gaaaacaacaaatttttgactta-aaaagttgaacatacaactttttaacaattt 276  Q
    |||||||||||| |||||||||  ||||||||||||||| |||||||||||||||    
T  3807981 gaaaacaacaaacttttgacttttaaaagttgaacataccactttttaacaattt 3807927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 296
Target Start/End: Original strand, 51243924 - 51243998
Alignment:
Q  223 gaaaacaacaaatttttgactta--aaaagttgaacatacaactttttaacaattttcaaagcaaaatttctaaat 296  Q
    |||| ||||||| |||||||||   |||||||||||||||| |||||||||| ||||||| ||||||||| |||||    
T  51243924 gaaagcaacaaacttttgactttttaaaagttgaacataca-ctttttaacagttttcaatgcaaaatttttaaat 51243998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University