View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14243_low_14 (Length: 318)

Name: NF14243_low_14
Description: NF14243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14243_low_14
NF14243_low_14
[»] chr2 (29 HSPs)
chr2 (1-300)||(35520907-35521209)
chr2 (2-73)||(1503200-1503270)
chr2 (2-73)||(1506404-1506474)
chr2 (2-73)||(13518572-13518642)
chr2 (2-82)||(15719043-15719122)
chr2 (1-82)||(45457419-45457502)
chr2 (2-82)||(15703739-15703818)
chr2 (1-73)||(34682954-34683026)
chr2 (1-82)||(43723967-43724049)
chr2 (2-73)||(11060068-11060138)
chr2 (1-82)||(36808208-36808291)
chr2 (1-82)||(45454131-45454214)
chr2 (1-52)||(26366181-26366231)
chr2 (13-82)||(24384925-24384994)
chr2 (1-82)||(25138692-25138775)
chr2 (1-82)||(25820608-25820691)
chr2 (1-82)||(25871041-25871121)
chr2 (1-53)||(5666784-5666835)
chr2 (1-82)||(13137155-13137237)
chr2 (1-53)||(15470725-15470776)
chr2 (1-82)||(31427306-31427389)
chr2 (1-73)||(6827038-6827111)
chr2 (16-82)||(36327107-36327171)
chr2 (2-82)||(38460582-38460663)
chr2 (1-72)||(29440752-29440821)
chr2 (1-82)||(8888893-8888973)
chr2 (16-84)||(23673343-23673409)
chr2 (39-82)||(35077227-35077271)
chr2 (39-82)||(35080485-35080529)
[»] scaffold0034 (1 HSPs)
scaffold0034 (1-85)||(48170-48254)
[»] chr5 (25 HSPs)
chr5 (3-83)||(18765497-18765577)
chr5 (5-84)||(26551923-26552002)
chr5 (2-73)||(3195362-3195432)
chr5 (2-73)||(30764506-30764576)
chr5 (5-82)||(26548364-26548441)
chr5 (2-82)||(28562130-28562210)
chr5 (2-82)||(28565698-28565778)
chr5 (2-82)||(30761687-30761767)
chr5 (1-82)||(31575692-31575773)
chr5 (2-82)||(34652525-34652605)
chr5 (2-73)||(2453563-2453633)
chr5 (2-73)||(19686451-19686521)
chr5 (2-82)||(19689834-19689914)
chr5 (1-82)||(7271303-7271385)
chr5 (1-83)||(21332439-21332522)
chr5 (1-53)||(33552406-33552457)
chr5 (1-83)||(4099290-4099373)
chr5 (1-73)||(28787094-28787167)
chr5 (1-52)||(30066596-30066646)
chr5 (1-54)||(10629488-10629540)
chr5 (1-82)||(22936707-22936787)
chr5 (1-73)||(32838154-32838225)
chr5 (1-52)||(7625378-7625429)
chr5 (1-53)||(21335490-21335541)
chr5 (39-82)||(22036169-22036213)
[»] chr7 (22 HSPs)
chr7 (2-82)||(5796814-5796894)
chr7 (2-82)||(22232395-22232475)
chr7 (2-82)||(22254264-22254344)
chr7 (2-82)||(26153434-26153513)
chr7 (2-84)||(5826475-5826557)
chr7 (2-73)||(8258168-8258238)
chr7 (2-73)||(8398100-8398170)
chr7 (2-73)||(11825134-11825204)
chr7 (2-73)||(23776170-23776241)
chr7 (1-82)||(35961372-35961455)
chr7 (1-82)||(10345448-10345530)
chr7 (1-82)||(11397820-11397903)
chr7 (1-82)||(13907569-13907651)
chr7 (2-56)||(23467064-23467117)
chr7 (1-82)||(26557771-26557854)
chr7 (2-54)||(22257528-22257579)
chr7 (1-52)||(48645739-48645789)
chr7 (7-81)||(24918458-24918532)
chr7 (3-52)||(17731094-17731142)
chr7 (39-83)||(44672786-44672831)
chr7 (39-82)||(1636692-1636736)
chr7 (39-82)||(23467014-23467058)
[»] chr3 (31 HSPs)
chr3 (2-84)||(2784389-2784471)
chr3 (2-82)||(3306133-3306213)
chr3 (1-82)||(27298323-27298404)
chr3 (2-82)||(4250669-4250747)
chr3 (2-82)||(25888238-25888317)
chr3 (2-73)||(42354178-42354248)
chr3 (2-82)||(281948-282029)
chr3 (2-82)||(30157797-30157877)
chr3 (2-82)||(2279386-2279465)
chr3 (3-82)||(27307884-27307963)
chr3 (2-82)||(10960170-10960254)
chr3 (2-82)||(10963677-10963761)
chr3 (2-82)||(18883495-18883575)
chr3 (5-82)||(41977375-41977453)
chr3 (1-73)||(10902310-10902383)
chr3 (1-54)||(31549554-31549606)
chr3 (1-82)||(52200276-52200359)
chr3 (1-53)||(10881850-10881901)
chr3 (2-64)||(10967186-10967251)
chr3 (1-73)||(16184446-16184516)
chr3 (1-52)||(20728419-20728469)
chr3 (1-73)||(28007830-28007903)
chr3 (1-84)||(35412866-35412948)
chr3 (1-52)||(47051856-47051907)
chr3 (2-73)||(54735979-54736049)
chr3 (1-82)||(10885225-10885308)
chr3 (39-82)||(10557802-10557846)
chr3 (5-82)||(19304445-19304523)
chr3 (1-82)||(22993450-22993533)
chr3 (13-53)||(46542620-46542660)
chr3 (1-53)||(47055286-47055338)
[»] scaffold0737 (1 HSPs)
scaffold0737 (2-82)||(7108-7189)
[»] chr4 (31 HSPs)
chr4 (1-82)||(33927247-33927328)
chr4 (2-73)||(10248096-10248166)
chr4 (2-73)||(10386214-10386284)
chr4 (2-82)||(17670582-17670662)
chr4 (2-73)||(11702354-11702424)
chr4 (2-73)||(18860048-18860118)
chr4 (1-82)||(5677183-5677263)
chr4 (1-82)||(12786397-12786480)
chr4 (1-82)||(35510266-35510349)
chr4 (1-82)||(56199128-56199211)
chr4 (2-82)||(26060778-26060860)
chr4 (1-81)||(15445120-15445202)
chr4 (1-53)||(3720635-3720686)
chr4 (1-82)||(3797579-3797662)
chr4 (1-82)||(15404846-15404929)
chr4 (1-82)||(15811900-15811983)
chr4 (1-73)||(19820989-19821062)
chr4 (1-82)||(18911781-18911861)
chr4 (1-82)||(33493447-33493528)
chr4 (2-82)||(37739526-37739607)
chr4 (1-82)||(52006285-52006368)
chr4 (1-53)||(11649244-11649296)
chr4 (1-82)||(19827696-19827778)
chr4 (1-82)||(56195801-56195884)
chr4 (1-84)||(34319682-34319764)
chr4 (1-48)||(37103009-37103055)
chr4 (1-54)||(15429640-15429693)
chr4 (1-54)||(15436254-15436307)
chr4 (53-82)||(22172188-22172217)
chr4 (13-82)||(2542061-2542128)
chr4 (1-82)||(44808723-44808802)
[»] scaffold0014 (2 HSPs)
scaffold0014 (2-82)||(223989-224068)
scaffold0014 (2-82)||(228915-228994)
[»] chr8 (23 HSPs)
chr8 (2-82)||(31981630-31981709)
chr8 (1-82)||(14589387-14589468)
chr8 (2-82)||(31986557-31986636)
chr8 (2-73)||(14188441-14188511)
chr8 (2-73)||(30645755-30645825)
chr8 (2-82)||(18695744-18695823)
chr8 (1-73)||(23644093-23644164)
chr8 (2-82)||(4868524-4868604)
chr8 (1-82)||(5538535-5538617)
chr8 (2-82)||(5964526-5964605)
chr8 (1-82)||(33883114-33883197)
chr8 (1-52)||(14422015-14422065)
chr8 (2-84)||(20262825-20262907)
chr8 (2-84)||(21049455-21049537)
chr8 (1-82)||(36710400-36710484)
chr8 (1-54)||(5980087-5980139)
chr8 (1-73)||(25231355-25231429)
chr8 (1-73)||(45155041-45155116)
chr8 (1-82)||(10664224-10664303)
chr8 (1-53)||(41836233-41836285)
chr8 (1-82)||(37681283-37681368)
chr8 (13-82)||(12575300-12575367)
chr8 (1-82)||(12583293-12583375)
[»] chr6 (26 HSPs)
chr6 (2-82)||(14966500-14966579)
chr6 (1-82)||(6514271-6514355)
chr6 (1-83)||(24371493-24371575)
chr6 (2-82)||(34502622-34502702)
chr6 (2-73)||(5617985-5618055)
chr6 (2-82)||(14969980-14970059)
chr6 (2-73)||(3826598-3826668)
chr6 (2-82)||(9839165-9839246)
chr6 (1-73)||(23008335-23008408)
chr6 (1-73)||(23779956-23780029)
chr6 (1-73)||(28111577-28111652)
chr6 (1-73)||(10290261-10290334)
chr6 (2-53)||(20186020-20186070)
chr6 (2-53)||(22149921-22149971)
chr6 (1-82)||(5260085-5260169)
chr6 (2-82)||(11192348-11192429)
chr6 (1-54)||(23842584-23842636)
chr6 (2-73)||(13095498-13095568)
chr6 (1-73)||(17106393-17106466)
chr6 (1-73)||(23381947-23382017)
chr6 (1-82)||(7559850-7559932)
chr6 (1-82)||(9954239-9954319)
chr6 (1-73)||(13005468-13005543)
chr6 (1-54)||(23848058-23848110)
chr6 (1-73)||(28107525-28107600)
chr6 (16-84)||(32427480-32427546)
[»] scaffold0062 (2 HSPs)
scaffold0062 (2-82)||(67600-67679)
scaffold0062 (2-82)||(52651-52730)
[»] scaffold0996 (1 HSPs)
scaffold0996 (1-83)||(1682-1767)
[»] scaffold0360 (2 HSPs)
scaffold0360 (2-73)||(6555-6625)
scaffold0360 (2-53)||(2723-2773)
[»] scaffold0233 (1 HSPs)
scaffold0233 (1-83)||(10215-10297)
[»] scaffold0214 (3 HSPs)
scaffold0214 (2-82)||(13887-13967)
scaffold0214 (2-82)||(20337-20417)
scaffold0214 (2-82)||(27903-27983)
[»] chr1 (10 HSPs)
chr1 (1-73)||(2405796-2405869)
chr1 (39-82)||(30938328-30938371)
chr1 (1-49)||(29643021-29643068)
chr1 (1-49)||(42022915-42022962)
chr1 (1-52)||(21018254-21018304)
chr1 (1-82)||(28111333-28111413)
chr1 (1-46)||(41058095-41058139)
chr1 (1-82)||(21110913-21110995)
chr1 (39-82)||(28138603-28138647)
chr1 (39-82)||(28141853-28141897)
[»] scaffold0002 (3 HSPs)
scaffold0002 (1-73)||(99008-99081)
scaffold0002 (1-54)||(118242-118295)
scaffold0002 (1-80)||(468224-468303)
[»] scaffold1063 (1 HSPs)
scaffold1063 (1-82)||(2772-2854)
[»] scaffold0757 (1 HSPs)
scaffold0757 (1-82)||(5637-5719)
[»] scaffold0080 (1 HSPs)
scaffold0080 (1-82)||(27396-27478)
[»] scaffold0045 (1 HSPs)
scaffold0045 (1-82)||(90045-90127)
[»] scaffold0520 (1 HSPs)
scaffold0520 (1-84)||(1302-1386)
[»] scaffold2073 (1 HSPs)
scaffold2073 (1-73)||(637-712)
[»] scaffold0962 (1 HSPs)
scaffold0962 (1-82)||(3048-3128)
[»] scaffold0015 (1 HSPs)
scaffold0015 (1-82)||(198429-198512)
[»] scaffold0884 (1 HSPs)
scaffold0884 (39-82)||(4289-4333)


Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 35521209 - 35520907
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaatatctatcacactcttcatgatcaatt 100  Q
    ||||| |||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||    
T  35521209 attgatattaacgcagttctcgtagatacgaatttatatttattacttcgata-aattagtacacttgctaaat--ctatcacactcttcatgatcaatt 35521113  T
Q  101 cataaattataaatatataaatgcatacaaaaatttaattttgaactaacatatatataga---caacctacatatgcaattaattcatgtttacagctc 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |   |||||||||||||||||||||||||||||| |||||    
T  35521112 cataaattataaatatataaatgcatacaaaaatttaattttgaactaacatatatatatagatcaacctacatatgcaattaattcatgtttagagctc 35521013  T
Q  198 taacttgtgtgagtacta---tatgacaaaccattgataaccgggtggtgtcccacaaacaaaccaacatgtcccataagcttatctttcctagaaaagg 294  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35521012 taacttgtgtgagtactactatatgacaaaccattgataaccgggtggtgtcccacaaacaaaccaacatgtcccataagcttatctttcctagaaaagg 35520913  T
Q  295 tagtgc 300  Q
    ||||||    
T  35520912 tagtgc 35520907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 1503270 - 1503200
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaa 73  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||||  |||||||||||||||||    
T  1503270 ttgagattaacacagtcctcgtggatacgaatttat-tttattacttcgatagttttagtacacttgctaaa 1503200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 1506474 - 1506404
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaa 73  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||||  |||||||||||||||||    
T  1506474 ttgagattaacacagtcctcgtggatacgaatttat-tttattacttcgatagttttagtacacttgctaaa 1506404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 13518572 - 13518642
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaa 73  Q
    |||||||||||||||||||||| |||||||| |||| ||||||||||||||||  |||||||||||||||||    
T  13518572 ttgagattaacacagtcctcgtggatacgaacttat-tttattacttcgatagttttagtacacttgctaaa 13518642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 15719122 - 15719043
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaatatctatca 82  Q
    |||||||||||||||||||||| |||||||| |||| ||||||||||| ||||  |||||||||||| |||| ||||||||    
T  15719122 ttgagattaacacagtcctcgtggatacgaacttat-tttattacttccatagttttagtacacttggtaaaaatctatca 15719043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 45457419 - 45457502
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgat--agaattagtacacttgctaaatatctatca 82  Q
    ||||||||||||||||||||||| |||||||| |||  ||||||||||||||  | | ||||||||||||||||| ||||||||    
T  45457419 attgagattaacacagtcctcgtggatacgaacttaattttattacttcgatgcatatttagtacacttgctaaaaatctatca 45457502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 15703818 - 15703739
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaatatctatca 82  Q
    |||| ||||||| ||||||||| |||||||| |||| ||||||||||||||||  ||||| ||||||||||| ||||||||    
T  15703818 ttgaaattaacatagtcctcgtggatacgaacttat-tttattacttcgatagttttagtgcacttgctaaaaatctatca 15703739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 34682954 - 34683026
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaa 73  Q
    |||||||||| || ||||||||| |||||||| |||| ||||||| ||| |||||||||||||||||| ||||    
T  34682954 attgagattaccatagtcctcgtggatacgaacttatttttattatttctatagaattagtacacttgttaaa 34683026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 43723967 - 43724049
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgataga--attagtacacttgctaaatatctatca 82  Q
    ||||||||||||||||||||||| |||||||| |||| ||||||||||||||| |   |||||||||||||||||  |||||||    
T  43723967 attgagattaacacagtcctcgtggatacgaacttat-tttattacttcgatatatttttagtacacttgctaaaattctatca 43724049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 11060068 - 11060138
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaa 73  Q
    |||||||||||||||| ||||| |||||||| |||| ||||||||||||||||  |||||||| ||||||||    
T  11060068 ttgagattaacacagttctcgtggatacgaacttat-tttattacttcgatagttttagtacatttgctaaa 11060138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 36808291 - 36808208
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaatt--agtacacttgctaaatatctatca 82  Q
    ||||||||||| ||||||||||| |||||||| |||  ||||||||||||||| | ||  | ||||||||||||| ||||||||    
T  36808291 attgagattaatacagtcctcgtggatacgaacttaattttattacttcgatatagtttaaatacacttgctaaaaatctatca 36808208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 45454131 - 45454214
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgat--agaattagtacacttgctaaatatctatca 82  Q
    ||||||||||||||||||||||| ||||| || |||  ||||||||||||||  | | |||||||||||||||||  |||||||    
T  45454131 attgagattaacacagtcctcgtggatacaaacttaattttattacttcgatgcatatttagtacacttgctaaaagtctatca 45454214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 26366181 - 26366231
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgat 52  Q
    ||||||||||||||||||||||| |||||||| |||| ||||||||||||||    
T  26366181 attgagattaacacagtcctcgtggatacgaacttat-tttattacttcgat 26366231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 24384994 - 24384925
Alignment:
Q  13 acagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaatatctatca 82  Q
    |||||| ||||  |||||||||||  ||||||||||||||||  || |||||||||| ||||||||||||    
T  24384994 acagtcatcgtgaatacgaatttaattttattacttcgatagttttggtacacttgccaaatatctatca 24384925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 25138775 - 25138692
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgataga--attagtacacttgct-aaatatctatca 82  Q
    ||||||||||||||| | ||||| |||||||| |||| ||||||||||||||| |   |||||||||||||| ||||||||||||    
T  25138775 attgagattaacacatttctcgtggatacgaacttat-tttattacttcgatatatttttagtacacttgctaaaatatctatca 25138692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 25820691 - 25820608
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgat--agaattagtacacttgct-aaatatctatca 82  Q
    ||||| ||||||||||||||||| |||||||| |||| ||||||||||||||  |   |||||||||||||| ||||||||||||    
T  25820691 attgaaattaacacagtcctcgtggatacgaacttat-tttattacttcgatgcatttttagtacacttgctaaaatatctatca 25820608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 25871041 - 25871121
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatag-aattagtacacttgctaaa-tatctatca 82  Q
    |||||||||||||||||||||||||  ||||   ||| |||| ||||||||||| | ||||||||||||||||| |||||||||    
T  25871041 attgagattaacacagtcctcgtaggaacga---tatttttactacttcgatagtatttagtacacttgctaaattatctatca 25871121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 5666784 - 5666835
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgata 53  Q
    |||||||| ||| ||||||||||||||||||| |||| |||||||||||||||    
T  5666784 attgagatcaacgcagtcctcgtagatacgaacttat-tttattacttcgata 5666835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 13137155 - 13137237
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgat--agaattagtacacttgctaaatatctatca 82  Q
    ||||||||||| ||||||||||| |||||||| |||| ||||||| ||||||  |   ||||||||||||||||| ||||||||    
T  13137155 attgagattaagacagtcctcgtggatacgaacttat-tttattatttcgatgcatttttagtacacttgctaaaaatctatca 13137237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 15470725 - 15470776
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgata 53  Q
    ||||| ||||||||||||||||| |||||||| |||| |||||||||||||||    
T  15470725 attgaaattaacacagtcctcgtggatacgaacttat-tttattacttcgata 15470776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 31427389 - 31427306
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgat--agaattagtacacttgctaaatatctatca 82  Q
    |||||||||||||||||| |||| |||||||| |||  ||||||||||||||  |   |||||||||||||||||  |||||||    
T  31427389 attgagattaacacagtcttcgtggatacgaacttaattttattacttcgatgcatttttagtacacttgctaaaagtctatca 31427306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 6827038 - 6827111
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaa--ttagtacacttgctaaa 73  Q
    ||||||||||||||||||||||| |||| ||| |||| |||||||||| |||  ||  |||||||||||||||||    
T  6827038 attgagattaacacagtcctcgtggatatgaacttat-tttattactttgatgcaattttagtacacttgctaaa 6827111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 36327107 - 36327171
Alignment:
Q  16 gtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaatatctatca 82  Q
    |||||||| |||||||||||||  |||||||||||||||  || || ||||||| ||||||||||||    
T  36327107 gtcctcgtggatacgaatttat--ttattacttcgatagttttggttcacttgccaaatatctatca 36327171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 38460663 - 38460582
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcga--tagaattagtacacttgctaaatatctatca 82  Q
    |||||||||||||||||||||||||||| || |||| |||| ||||||||  ||   |||||||||||||||||  |||||||    
T  38460663 ttgagattaacacagtcctcgtagatacaaacttat-tttactacttcgatgtatttttagtacacttgctaaaagtctatca 38460582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 29440752 - 29440821
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatag-aattagtacacttgctaa 72  Q
    ||||||||||||||||||||||| || ||||   ||| |||| ||||||||||| | ||||||||||||||||    
T  29440752 attgagattaacacagtcctcgtggaaacga---tatttttactacttcgatagtatttagtacacttgctaa 29440821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 8888893 - 8888973
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatag-aattagtacacttgct-aaatatctatca 82  Q
    ||||||||||||||||||||||| |  ||||   ||| |||| ||||||||||| | |||||||||||||| ||||||||||||    
T  8888893 attgagattaacacagtcctcgtgggaacga---tatttttactacttcgatagtatttagtacacttgctaaaatatctatca 8888973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 23673409 - 23673343
Alignment:
Q  16 gtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaatatctatcaca 84  Q
    |||||||| |||||||||||||  |||||||||||||||  || || ||||||| |||| |||||||||    
T  23673409 gtcctcgtggatacgaatttat--ttattacttcgatagttttggttcacttgccaaatctctatcaca 23673343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 82
Target Start/End: Original strand, 35077227 - 35077271
Alignment:
Q  39 tttattacttcgatagaa-ttagtacacttgctaaatatctatca 82  Q
    ||||||||||||||| || |||||||||||||||| |||||||||    
T  35077227 tttattacttcgatataagttagtacacttgctaattatctatca 35077271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 82
Target Start/End: Original strand, 35080485 - 35080529
Alignment:
Q  39 tttattacttcgatagaa-ttagtacacttgctaaatatctatca 82  Q
    ||||||||||||||| || |||||||||||||||| |||||||||    
T  35080485 tttattacttcgatataagttagtacacttgctaattatctatca 35080529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 48254 - 48170
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaatatctatcacac 85  Q
    |||||||||||||||||| |||| |||||||| |||||||||||||||| ||||  |||||||||||||||||||||||||||||    
T  48254 attgagattaacacagtcatcgtggatacgaacttatatttattacttcaatagttttagtacacttgctaaatatctatcacac 48170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 18765577 - 18765497
Alignment:
Q  3 tgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaatatctatcac 83  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||| |||||||||||| |||||||    
T  18765577 tgagattaacacagtcctcgtagatacgaacttagatttattacttcgataaaattagtatacttgctaaatagctatcac 18765497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 26551923 - 26552002
Alignment:
Q  5 agattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgct-aaatatctatcaca 84  Q
    ||||||||||||||||||| |||||||| |||| ||||||||||||||||  |||||||||||||| ||||||||||||||    
T  26551923 agattaacacagtcctcgtggatacgaacttat-tttattacttcgatagttttagtacacttgctaaaatatctatcaca 26552002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 3195362 - 3195432
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaa 73  Q
    |||||||||||||||||||||| |||||||| |||| ||||||||||||||||  |||||||||||||||||    
T  3195362 ttgagattaacacagtcctcgtggatacgaacttat-tttattacttcgatagttttagtacacttgctaaa 3195432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 30764506 - 30764576
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaa 73  Q
    |||||||||||||||||||||| |||||||| |||| ||||||||||||||||  |||||||||||||||||    
T  30764506 ttgagattaacacagtcctcgtggatacgaacttat-tttattacttcgatagttttagtacacttgctaaa 30764576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 26548364 - 26548441
Alignment:
Q  5 agattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgct-aaatatctatca 82  Q
    ||||||||||||||||||| |||||||| |||| ||||||||||||||||  |||||||||||||| ||||||||||||    
T  26548364 agattaacacagtcctcgtggatacgaacttat-tttattacttcgatagttttagtacacttgctaaaatatctatca 26548441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 28562210 - 28562130
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgct-aaatatctatca 82  Q
    |||||||||||||||||||||| ||||||||  ||| ||||||||||||||||  |||||||||||||| ||||||||||||    
T  28562210 ttgagattaacacagtcctcgtggatacgaacctat-tttattacttcgatagttttagtacacttgctaaaatatctatca 28562130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 28565778 - 28565698
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgct-aaatatctatca 82  Q
    |||||||||||||||||||||| ||||||||  ||| ||||||||||||||||  |||||||||||||| ||||||||||||    
T  28565778 ttgagattaacacagtcctcgtggatacgaacctat-tttattacttcgatagttttagtacacttgctaaaatatctatca 28565698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 30761687 - 30761767
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgct-aaatatctatca 82  Q
    |||||||||||||||||||||| |||||||| |||| ||||||||||||||||  |||||||||||||| |||||| |||||    
T  30761687 ttgagattaacacagtcctcgtggatacgaacttat-tttattacttcgatagttttagtacacttgctgaaatatttatca 30761767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 31575692 - 31575773
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaatatctatca 82  Q
    ||||||||||| || ||||| || || ||||| |||| ||||||||||||||| |||||||||||||| |||||||||||||    
T  31575692 attgagattaatacggtccttgtggaaacgaacttatttttattacttcgataaaattagtacacttgttaaatatctatca 31575773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 34652605 - 34652525
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgct-aaatatctatca 82  Q
    |||||||||||||||||||||| ||||| || |||| ||||||||||||||||  |||||||||||||| ||||||||||||    
T  34652605 ttgagattaacacagtcctcgtggatacaaacttat-tttattacttcgatagttttagtacacttgctaaaatatctatca 34652525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 2453563 - 2453633
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaa 73  Q
    |||||||||||||||||||||| ||||| || |||| ||||||||||||||||  |||||||||||||||||    
T  2453563 ttgagattaacacagtcctcgtggatacaaacttat-tttattacttcgatagttttagtacacttgctaaa 2453633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 19686451 - 19686521
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaa 73  Q
    |||||||||||||||||||||| |||||||| |||| |||| |||||||||||  |||||||||||||||||    
T  19686451 ttgagattaacacagtcctcgtggatacgaacttat-tttactacttcgatagttttagtacacttgctaaa 19686521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 19689834 - 19689914
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgct-aaatatctatca 82  Q
    |||||||||||||||| ||||| |||||||| |||| |||| |||||||||||  |||||||||||||| ||||||||||||    
T  19689834 ttgagattaacacagtgctcgtggatacgaacttat-tttactacttcgatagttttagtacacttgctaaaatatctatca 19689914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 7271303 - 7271385
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgataga--attagtacacttgctaaatatctatca 82  Q
    ||||||||||||||||||||||| |||||||| |||| ||||||||||||||| |   |||||||||||||||||  |||||||    
T  7271303 attgagattaacacagtcctcgtggatacgaacttat-tttattacttcgatacatttttagtacacttgctaaaagtctatca 7271385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 21332522 - 21332439
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgataga--attagtacacttgctaaatatctatcac 83  Q
    ||||| ||||||||||||||||| |||||||| |||| ||||||||||||||| |   |||||||||||||||||  ||||||||    
T  21332522 attgaaattaacacagtcctcgtggatacgaacttat-tttattacttcgatacatttttagtacacttgctaaaagtctatcac 21332439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 33552406 - 33552457
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgata 53  Q
    ||||||||||||||||||||||| |||||||| |||| |||||||||||||||    
T  33552406 attgagattaacacagtcctcgtggatacgaacttat-tttattacttcgata 33552457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 4099373 - 4099290
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgat--agaattagtacacttgctaaatatctatcac 83  Q
    ||||| ||||||||||||||||| |||||||| |||| ||||||||||||||  |   |||||||||||||||||  ||||||||    
T  4099373 attgatattaacacagtcctcgtggatacgaacttat-tttattacttcgatgcatttttagtacacttgctaaaagtctatcac 4099290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 28787167 - 28787094
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaatt--agtacacttgctaaa 73  Q
    ||||||| |||||| |||||||| |||||||| |||| ||||||||||||||| | ||  |||||||||||||||    
T  28787167 attgagactaacacggtcctcgtggatacgaacttat-tttattacttcgatacatttttagtacacttgctaaa 28787094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 30066596 - 30066646
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgat 52  Q
    ||||||||||||||||||||||| ||||||||  ||| ||||||||||||||    
T  30066596 attgagattaacacagtcctcgtggatacgaacctat-tttattacttcgat 30066646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 10629488 - 10629540
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatag 54  Q
    ||||||||||||||||||||| | ||||| || |||| ||||||||||||||||    
T  10629488 attgagattaacacagtcctcatggatacaaacttat-tttattacttcgatag 10629540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 22936787 - 22936707
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatag-aattagtacacttgct-aaatatctatca 82  Q
    ||||||||||||||||||||||| |  ||||   ||| |||| ||||||||||| | |||||||||||||| ||||||||||||    
T  22936787 attgagattaacacagtcctcgtgggaacga---tatttttactacttcgatagtatttagtacacttgctaaaatatctatca 22936707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 32838154 - 32838225
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgataga--attagtacacttgctaaa 73  Q
    ||||||||||||||||||||||| || ||||   ||| ||||||||||||||| |   |||||||||||||||||    
T  32838154 attgagattaacacagtcctcgtggaaacga---tatttttattacttcgatacatttttagtacacttgctaaa 32838225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 7625378 - 7625429
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaa-tttatatttattacttcgat 52  Q
    ||||||||||||||||||||||| |||||||| ||||| |||| |||||||||    
T  7625378 attgagattaacacagtcctcgtggatacgaactttat-tttactacttcgat 7625429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 21335541 - 21335490
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgata 53  Q
    ||||| ||||||||||||||||| ||||| || |||| |||||||||||||||    
T  21335541 attgaaattaacacagtcctcgtggatacaaacttat-tttattacttcgata 21335490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 82
Target Start/End: Original strand, 22036169 - 22036213
Alignment:
Q  39 tttattacttcgatagaa-ttagtacacttgctaaatatctatca 82  Q
    ||||||||||||||| || |||||||||||||||| |||||||||    
T  22036169 tttattacttcgatataagttagtacacttgctaattatctatca 22036213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 5796814 - 5796894
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaatatctatca 82  Q
    ||||||||||||||||| |||| |||||||| |||| ||||||||||||||||  |||||||||||||||||| |||||||    
T  5796814 ttgagattaacacagtcttcgtggatacgaacttatttttattacttcgatagttttagtacacttgctaaatttctatca 5796894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 22232475 - 22232395
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgct-aaatatctatca 82  Q
    |||||||||||||||||||||| |||||||| |||| ||||||||||||||||  |||||||||||||| ||||||||||||    
T  22232475 ttgagattaacacagtcctcgtggatacgaacttat-tttattacttcgatagttttagtacacttgctaaaatatctatca 22232395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 22254264 - 22254344
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgct-aaatatctatca 82  Q
    |||||||||||||||||||||| |||||||| |||| ||||||||||||||||  |||||||||||||| ||||||||||||    
T  22254264 ttgagattaacacagtcctcgtggatacgaacttat-tttattacttcgatagttttagtacacttgctaaaatatctatca 22254344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 26153434 - 26153513
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaatatctatca 82  Q
    |||||||||||||||||||||| |||||||| |||| ||||||||||||||||  |||||||||||||||||  |||||||    
T  26153434 ttgagattaacacagtcctcgtggatacgaacttat-tttattacttcgatagttttagtacacttgctaaaagtctatca 26153513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 5826557 - 5826475
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgct-aaatatctatcaca 84  Q
    |||||||||||||||||||||| |||| ||| |||| ||||||||||||||||  |||||||||||||| ||||||||||||||    
T  5826557 ttgagattaacacagtcctcgtggataagaacttat-tttattacttcgatagttttagtacacttgctaaaatatctatcaca 5826475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 8258168 - 8258238
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaa 73  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||||||  |||||||||||| ||||    
T  8258168 ttgagattaacacagtcctcgtagatacgaacttat-tttattacttcgatagttttagtacacttgttaaa 8258238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 8398100 - 8398170
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaa 73  Q
    |||||||||||||||||||||| |||||||| |||| ||||||||||||||||  |||||||||||||||||    
T  8398100 ttgagattaacacagtcctcgtggatacgaacttat-tttattacttcgatagttttagtacacttgctaaa 8398170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 11825204 - 11825134
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaa 73  Q
    |||||||||||||||||||||| |||||||| |||| ||||||||||||||||  |||||||||||||||||    
T  11825204 ttgagattaacacagtcctcgtggatacgaacttat-tttattacttcgatagttttagtacacttgctaaa 11825134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 23776170 - 23776241
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaa 73  Q
    ||||||||||||||||||||||||| ||||| |||| ||||||||||||||||  |||||| ||||||||||    
T  23776170 ttgagattaacacagtcctcgtagaaacgaacttatttttattacttcgatagttttagtatacttgctaaa 23776241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 35961372 - 35961455
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgataga--attagtacacttgct-aaatatctatca 82  Q
    ||||||||||||||||||||||| |||||||| |||| ||||||||||||||| |   ||||||||||| || ||||||||||||    
T  35961372 attgagattaacacagtcctcgtggatacgaacttat-tttattacttcgatacatttttagtacactttctaaaatatctatca 35961455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 10345448 - 10345530
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgataga--attagtacacttgctaaatatctatca 82  Q
    ||||||||||||||| ||||||| |||||||| |||| ||||||||||||||| |   |||||||||||||||||  |||||||    
T  10345448 attgagattaacacaatcctcgtggatacgaacttat-tttattacttcgatacatttttagtacacttgctaaaattctatca 10345530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 11397903 - 11397820
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgat--agaattagtacacttgctaaatatctatca 82  Q
    ||||||||||||||||||||||| |||||||| |||  ||||||||||||||  |   |||||||||||||||||  |||||||    
T  11397903 attgagattaacacagtcctcgtggatacgaacttaattttattacttcgatgcatttttagtacacttgctaaaagtctatca 11397820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 13907651 - 13907569
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaatt-agtacacttgctaaatatctatca 82  Q
    |||||||||||||||||||| ||  ||| ||| |||| ||||| ||||| ||||  || ||||||||||||||||||||||||    
T  13907651 attgagattaacacagtccttgtgcatatgaacttatttttatcacttctatagtttttagtacacttgctaaatatctatca 13907569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 23467117 - 23467064
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaa 56  Q
    ||||||||||||||||||||||  ||||||| |||| ||||||||||||||||||    
T  23467117 ttgagattaacacagtcctcgtgtatacgaacttat-tttattacttcgatagaa 23467064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 26557771 - 26557854
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgata--gaattagtacacttgct-aaatatctatca 82  Q
    ||||||||||||||||||||||| |||| ||| |||| |||||||||||||||     |||||||||||||| ||||||||||||    
T  26557771 attgagattaacacagtcctcgtggatatgaacttat-tttattacttcgatacgtttttagtacacttgctaaaatatctatca 26557854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 22257528 - 22257579
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatag 54  Q
    |||||||||||||||||||||| |||||||  |||| ||||||||||||||||    
T  22257528 ttgagattaacacagtcctcgtggatacgatcttat-tttattacttcgatag 22257579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 48645739 - 48645789
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgat 52  Q
    ||||| ||||||||||||||||| |||||||| |||| ||||||||||||||    
T  48645739 attgaaattaacacagtcctcgtggatacgaacttat-tttattacttcgat 48645789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 24918458 - 24918532
Alignment:
Q  7 attaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaatatctatc 81  Q
    ||||||| ||| ||||| |||||||| ||  ||||||||||| |||||  |||||| |||||||||| |||||||    
T  24918458 attaacagagttctcgtggatacgaactttgatttattactttgatagttttagtatacttgctaaaaatctatc 24918532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 17731094 - 17731142
Alignment:
Q  3 tgagattaacacagtcctcgtagatacgaatttatatttattacttcgat 52  Q
    |||||||||||||||||| || |||||||| |||| ||||||||||||||    
T  17731094 tgagattaacacagtccttgtggatacgaacttat-tttattacttcgat 17731142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 44672831 - 44672786
Alignment:
Q  39 tttattacttcgatagaa-ttagtacacttgctaaatatctatcac 83  Q
    ||||||||||||||| || |||||||||||||||| ||||||||||    
T  44672831 tttattacttcgatataagttagtacacttgctaattatctatcac 44672786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 1636736 - 1636692
Alignment:
Q  39 tttattacttcgatagaa-ttagtacacttgctaaatatctatca 82  Q
    ||||||||||||||| || |||||||||||||||| |||||||||    
T  1636736 tttattacttcgatataagttagtacacttgctaattatctatca 1636692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 23467058 - 23467014
Alignment:
Q  39 tttattacttcgatagaattagtacacttgct-aaatatctatca 82  Q
    ||||||||||||||||  |||||||||||||| ||||||||||||    
T  23467058 tttattacttcgatagttttagtacacttgctaaaatatctatca 23467014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 2784389 - 2784471
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgct-aaatatctatcaca 84  Q
    |||||||||||||||||||||| |||||||| |||| ||||||||||||||||  |||||||||||||| ||||||||||||||    
T  2784389 ttgagattaacacagtcctcgtggatacgaacttat-tttattacttcgatagttttagtacacttgctaaaatatctatcaca 2784471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 3306133 - 3306213
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatag-aattagtacacttgctaaatatctatca 82  Q
    |||||||||||||||||||||| |||||||| ||| |||||||||||||||||  ||| |||||||||| ||||||||||||    
T  3306133 ttgagattaacacagtcctcgtggatacgaactta-atttattacttcgatagttattggtacacttgccaaatatctatca 3306213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 27298404 - 27298323
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaatatctatca 82  Q
    ||||||||||||||| ||| ||| |||||||| | | | |||||||||||||| |||||||||| |||||||||||||||||    
T  27298404 attgagattaacacaatccccgtggatacgaactcagaattattacttcgataaaattagtacagttgctaaatatctatca 27298323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 4250669 - 4250747
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaatatctatca 82  Q
    |||||||||||||||||||||| | ||||||||||| ||||||||||||||||  |||||||||||||||||  |||||||    
T  4250669 ttgagattaacacagtcctcgtgg-tacgaatttat-tttattacttcgatagttttagtacacttgctaaaagtctatca 4250747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 25888317 - 25888238
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaatatctatca 82  Q
    |||||||||||||||||||||| |||||||| |||| ||||||||||||||||  |||||| |||||||||| || |||||    
T  25888317 ttgagattaacacagtcctcgtcgatacgaacttat-tttattacttcgatagttttagtatacttgctaaaaatttatca 25888238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 42354248 - 42354178
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaa 73  Q
    |||||||| ||||||||||||| |||||||| |||| ||||||||||||||||  |||||||||||||||||    
T  42354248 ttgagattgacacagtcctcgtggatacgaacttat-tttattacttcgatagttttagtacacttgctaaa 42354178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 282029 - 281948
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttg-ctaaatatctatca 82  Q
    |||||||||||||||||||| | |||||||| ||| | |||||||||||||||||||| ||||| ||  |||||||||||||    
T  282029 ttgagattaacacagtcctcttggatacgaacttagaattattacttcgatagaattaatacacctgtttaaatatctatca 281948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 30157877 - 30157797
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatag-aattagtacacttgctaaatatctatca 82  Q
    |||||||||||||||||||||| |||||||| ||| |||||||||||||||||  ||| |||||||||| |||| |||||||    
T  30157877 ttgagattaacacagtcctcgtggatacgaactta-atttattacttcgatagttattggtacacttgccaaatttctatca 30157797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 2279465 - 2279386
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaatatctatca 82  Q
    |||||||||||||||||||||| |||||||| |||| ||||||||||||||||  |||||| ||||| ||||  |||||||    
T  2279465 ttgagattaacacagtcctcgtggatacgaacttat-tttattacttcgatagttttagtatacttgataaaagtctatca 2279386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 27307963 - 27307884
Alignment:
Q  3 tgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaatatctatca 82  Q
    ||||||||||||| || |  | |||||||| ||| | |||||||||||||| |||||||| |||||||||||||||||||    
T  27307963 tgagattaacacaatctttatggatacgaacttagaattattacttcgataaaattagtaaacttgctaaatatctatca 27307884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 10960170 - 10960254
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaa---tttatatttattacttcgatagaattagtacacttgct-aaatatctatca 82  Q
    |||||||||||||||||||||| ||||||||    |||| ||||||||||||||||  ||||||| |||||| ||||||||||||    
T  10960170 ttgagattaacacagtcctcgtggatacgaacttattatttttattacttcgatagttttagtacgcttgctaaaatatctatca 10960254  T

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Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 10963677 - 10963761
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaa---tttatatttattacttcgatagaattagtacacttgct-aaatatctatca 82  Q
    |||||||||||||||||||||| ||||||||    |||| ||||||||||||||||  ||||||| |||||| ||||||||||||    
T  10963677 ttgagattaacacagtcctcgtggatacgaacttattatttttattacttcgatagttttagtacgcttgctaaaatatctatca 10963761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 18883495 - 18883575
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgct-aaatatctatca 82  Q
    ||||||||||||||||||||||  ||||||| |||| |||| ||||| |||||  |||||||||||||| ||||||||||||    
T  18883495 ttgagattaacacagtcctcgtgaatacgaacttat-tttactactttgatagttttagtacacttgctaaaatatctatca 18883575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 41977375 - 41977453
Alignment:
Q  5 agattaacacagtcctcgtagatacgaatttatatttattacttcgataga--attagtacacttgctaaatatctatca 82  Q
    ||||||||||||||||||||||||| || |||| ||||||||||||||| |   ||| ||||||||||||| ||||||||    
T  41977375 agattaacacagtcctcgtagatacaaacttat-tttattacttcgatacatttttaatacacttgctaaaaatctatca 41977453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 10902310 - 10902383
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgataga--attagtacacttgctaaa 73  Q
    ||||||||||||||||||||||| |||||||| |||| |||||||||| |||| |   |||||||||||||||||    
T  10902310 attgagattaacacagtcctcgtggatacgaacttat-tttattacttagatacatttttagtacacttgctaaa 10902383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 31549554 - 31549606
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatag 54  Q
    |||||||||||||||||| |||| |||||||| |||| ||||||||||||||||    
T  31549554 attgagattaacacagtcatcgtggatacgaacttat-tttattacttcgatag 31549606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 52200276 - 52200359
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgataga--attagtacacttgct-aaatatctatca 82  Q
    ||||| ||||||||||||||||| |||||||| |||| ||||||||||||||| |   ||| |||||||||| ||||||||||||    
T  52200276 attgaaattaacacagtcctcgtggatacgaacttat-tttattacttcgatacatttttaatacacttgctaaaatatctatca 52200359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 10881850 - 10881901
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgata 53  Q
    ||||| ||||||||||||||||| |||||||| |||| |||||||||||||||    
T  10881850 attgatattaacacagtcctcgtggatacgaacttat-tttattacttcgata 10881901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 10967186 - 10967251
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaa---tttatatttattacttcgatagaattagtaca 64  Q
    |||||||||||||||||||||| ||||||||    |||| ||||||||||||||||  ||||||||    
T  10967186 ttgagattaacacagtcctcgtggatacgaacttattatttttattacttcgatagttttagtaca 10967251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 16184516 - 16184446
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatag-aattagtacacttgctaaa 73  Q
    ||||||||||||||||||||||| || ||||   ||| |||| ||||||||||| | |||||||||||||||||    
T  16184516 attgagattaacacagtcctcgtggaaacga---tatttttactacttcgatagtatttagtacacttgctaaa 16184446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 20728469 - 20728419
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgat 52  Q
    ||||||||||||||||||||| | |||||||| |||| ||||||||||||||    
T  20728469 attgagattaacacagtcctcatggatacgaacttat-tttattacttcgat 20728419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 28007903 - 28007830
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgat--agaattagtacacttgctaaa 73  Q
    ||||||||||||| ||||||||| |||||||| |||| ||||| ||||||||  | | |||||||||||||||||    
T  28007903 attgagattaacatagtcctcgtggatacgaacttat-tttatcacttcgatgcatatttagtacacttgctaaa 28007830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 35412866 - 35412948
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatag-aattagtacacttgct-aaatatctatcaca 84  Q
    ||||||||||||||||||||||| |  ||||   ||| |||| ||||||||||| | |||||||||||||| ||||||||||||||    
T  35412866 attgagattaacacagtcctcgtgggaacga---tatttttactacttcgatagtatttagtacacttgctaaaatatctatcaca 35412948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 47051856 - 47051907
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgat 52  Q
    ||||||||||||| ||||||||| |||||||| |||  ||||||||||||||    
T  47051856 attgagattaacatagtcctcgtggatacgaacttaattttattacttcgat 47051907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 54736049 - 54735979
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaa 73  Q
    |||||||||||||| ||||||| |||||||| |||| ||||| |||||||||   ||| |||||||||||||    
T  54736049 ttgagattaacacaatcctcgtggatacgaacttat-tttataacttcgataattttaatacacttgctaaa 54735979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 10885225 - 10885308
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgat--agaattagtacacttgct-aaatatctatca 82  Q
    ||||||||||||||||||||||| ||||| || |||| |||||||||| |||  |   |||||||||||||| ||||||||||||    
T  10885225 attgagattaacacagtcctcgtggatacaaacttat-tttattactttgatgcatttttagtacacttgctaaaatatctatca 10885308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 10557846 - 10557802
Alignment:
Q  39 tttattacttcgatagaa-ttagtacacttgctaaatatctatca 82  Q
    ||||||||||||||| || |||||||||||||||| |||||||||    
T  10557846 tttattacttcgatataagttagtacacttgctaattatctatca 10557802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 19304523 - 19304445
Alignment:
Q  5 agattaacacagtcctcgtagatacgaatttatatttattacttcgatagaatt--agtacacttgctaaatatctatca 82  Q
    ||||||||| ||||||||| ||||| || |||| ||||||||||||||  ||||  |||||||||||||||  |||||||    
T  19304523 agattaacagagtcctcgtggatacaaacttat-tttattacttcgatgcaattttagtacacttgctaaaagtctatca 19304445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 22993533 - 22993450
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaa-tttatatttattacttcgatag-aattagtacacttgct-aaatatctatca 82  Q
    ||||||||||||||  ||||||| || ||||| ||||| ||||||||||||||||   |||||||||||||| ||||||||||||    
T  22993533 attgagattaacacgatcctcgtggaaacgaactttat-tttattacttcgatagtttttagtacacttgctaaaatatctatca 22993450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 46542620 - 46542660
Alignment:
Q  13 acagtcctcgtagatacgaatttatatttattacttcgata 53  Q
    ||||||||||||||||||||||||  |||||||||| ||||    
T  46542620 acagtcctcgtagatacgaatttaattttattactttgata 46542660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 47055286 - 47055338
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgata 53  Q
    ||||||||||||||| ||||||| ||||||||  ||  |||||||||||||||    
T  47055286 attgagattaacacaatcctcgtggatacgaacctaattttattacttcgata 47055338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 7189 - 7108
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgct-aaatatctatca 82  Q
    ||||||||||||| |||||||| |||||||| |||| ||||||||||||||||  |||||||||||||| ||||||||||||    
T  7189 ttgagattaacaccgtcctcgtggatacgaacttatttttattacttcgatagttttagtacacttgctaaaatatctatca 7108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 33927247 - 33927328
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaatatctatca 82  Q
    ||||||||||||||||||||||| |||||||| |||  ||||||||||||||||  |||||||||||||||||  |||||||    
T  33927247 attgagattaacacagtcctcgtggatacgaacttaattttattacttcgatagttttagtacacttgctaaaagtctatca 33927328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 10248096 - 10248166
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaa 73  Q
    |||||||||||||||||||||| |||||||| |||| ||||||||||||||||  |||||||||||||||||    
T  10248096 ttgagattaacacagtcctcgtggatacgaacttat-tttattacttcgatagttttagtacacttgctaaa 10248166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 10386214 - 10386284
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaa 73  Q
    |||||||||||||||||||||| |||||||| |||| ||||||||||||||||  |||||||||||||||||    
T  10386214 ttgagattaacacagtcctcgtggatacgaacttat-tttattacttcgatagttttagtacacttgctaaa 10386284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 17670582 - 17670662
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgct-aaatatctatca 82  Q
    |||||||||||| ||||||||| |||||||| |||| ||||||||||||||||  |||||||||||||| ||||||||||||    
T  17670582 ttgagattaacatagtcctcgtggatacgaacttat-tttattacttcgatagttttagtacacttgctaaaatatctatca 17670662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 11702424 - 11702354
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaa 73  Q
    ||||||||||||||||| |||| |||||||| |||| ||||||||||||||||  |||||||||||||||||    
T  11702424 ttgagattaacacagtcttcgtggatacgaacttat-tttattacttcgatagttttagtacacttgctaaa 11702354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 18860048 - 18860118
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaa 73  Q
    |||||||||||||||||||||| |||||||| |||| |||||||||||||||   |||||||||||||||||    
T  18860048 ttgagattaacacagtcctcgtggatacgaacttat-tttattacttcgatatttttagtacacttgctaaa 18860118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 5677263 - 5677183
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaatatctatca 82  Q
    |||||||||| |||| ||||||| ||||||||  ||| ||||||||||||||||||||| ||| ||||||||||||| ||||    
T  5677263 attgagatta-cacaatcctcgtggatacgaacatatttttattacttcgatagaattactactcttgctaaatatccatca 5677183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 12786397 - 12786480
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgataga--attagtacacttgct-aaatatctatca 82  Q
    ||||||||||||||||||||||| |||||||| |||| ||||||||||||||| |   |||||||||||||| ||||||||||||    
T  12786397 attgagattaacacagtcctcgtggatacgaacttat-tttattacttcgatacatttttagtacacttgctaaaatatctatca 12786480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 35510266 - 35510349
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgataga--attagtacacttgct-aaatatctatca 82  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||| |||| |   |||||||||||||| ||||||||||||    
T  35510266 attgagattaacacagtcctcgtggatacgaatttat-tttattacttggatacatttttagtacacttgctaaaatatctatca 35510349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 56199128 - 56199211
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgat--agaattagtacacttgctaaatatctatca 82  Q
    ||||||||||||||||||||||| |||||||| |||  ||||||||||||||  |   ||||||||||||||||| ||||||||    
T  56199128 attgagattaacacagtcctcgtggatacgaacttaattttattacttcgatgcatttttagtacacttgctaaaaatctatca 56199211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 26060778 - 26060860
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgataga--attagtacacttgctaaatatctatca 82  Q
    |||||||||||| ||||||||| |||||||| |||| ||||||||||||||| |   |||||||||||||||||  |||||||    
T  26060778 ttgagattaacatagtcctcgtggatacgaacttatttttattacttcgatacatttttagtacacttgctaaaagtctatca 26060860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 15445202 - 15445120
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatag-aattagtacacttgct-aaatatctatc 81  Q
    |||||||||||  |||||||||| |||||||| |||| |||| ||||||||||| | |||||||||||||| |||||||||||    
T  15445202 attgagattaaatcagtcctcgtggatacgaacttatttttactacttcgatagtatttagtacacttgctaaaatatctatc 15445120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 3720635 - 3720686
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgata 53  Q
    ||||||||||||||||||||||| |||||||| |||| |||||||||||||||    
T  3720635 attgagattaacacagtcctcgtggatacgaacttat-tttattacttcgata 3720686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 3797662 - 3797579
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgat--agaattagtacacttgctaaatatctatca 82  Q
    ||||||||||||||||||||||| |||||||| |||  ||||||||||||||  |   |||||||||||||||||  |||||||    
T  3797662 attgagattaacacagtcctcgtggatacgaacttaattttattacttcgatgcatttttagtacacttgctaaaagtctatca 3797579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 15404929 - 15404846
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgat--agaattagtacacttgctaaatatctatca 82  Q
    |||||||||||||||||| |||| |||||||| |||  ||||||||||||||  | | |||||||||||||||||  |||||||    
T  15404929 attgagattaacacagtcgtcgtggatacgaacttaattttattacttcgatgcatatttagtacacttgctaaaagtctatca 15404846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 15811983 - 15811900
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgat--agaattagtacacttgctaaatatctatca 82  Q
    ||||||||||||||||||||||| |||||||| |||  ||||||||||||||  |   |||||||||||||||||  |||||||    
T  15811983 attgagattaacacagtcctcgtggatacgaacttaattttattacttcgatgcatttttagtacacttgctaaaggtctatca 15811900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 19820989 - 19821062
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgataga--attagtacacttgctaaa 73  Q
    ||||||||||||||| ||||||| |||||||| |||| ||||||||||||||| |   |||||||||||||||||    
T  19820989 attgagattaacacaatcctcgtggatacgaacttat-tttattacttcgatacatttttagtacacttgctaaa 19821062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 18911781 - 18911861
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatag-aattagtacacttgct-aaatatctatca 82  Q
    ||||||||||||||||||||||| || ||||   ||| |||| ||||||||||| | |||||||||||||| ||||||||||||    
T  18911781 attgagattaacacagtcctcgtggaaacga---tatttttactacttcgatagtatttagtacacttgctaaaatatctatca 18911861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 33493528 - 33493447
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaatatctatca 82  Q
    ||||| ||||||||| |||||||  ||||||| ||| | |||||| ||  |||||| |||| ||||||||||||||||||||    
T  33493528 attgaaattaacacaatcctcgtgaatacgaacttagaattattattttaatagaactagtgcacttgctaaatatctatca 33493447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 37739607 - 37739526
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatag-aattagtacacttgctaaatatctatca 82  Q
    ||||||||||||| |||||||| || ||||| |||  | ||||||||||||||   ||| ||||||||||||||||||||||    
T  37739607 ttgagattaacacggtcctcgtggaaacgaacttaattgtattacttcgatagtttttaatacacttgctaaatatctatca 37739526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 52006368 - 52006285
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgat--agaattagtacacttgct-aaatatctatca 82  Q
    ||||||||||||||||||||||| ||||| || |||| ||||||||||||||  |   |||||||||||||| ||||||||||||    
T  52006368 attgagattaacacagtcctcgtggatacaaacttat-tttattacttcgattcatttttagtacacttgctaaaatatctatca 52006285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 11649296 - 11649244
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgata 53  Q
    ||||||||||||||||||||| | |||||||| |||| ||||||| |||||||    
T  11649296 attgagattaacacagtcctcatggatacgaacttatttttattatttcgata 11649244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 19827696 - 19827778
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgataga--attagtacacttgctaaatatctatca 82  Q
    ||||||||||||||| ||||||| |||||||| |||| ||||||||||||| | |   |||||||||||||||||  |||||||    
T  19827696 attgagattaacacaatcctcgtggatacgaacttat-tttattacttcgagacatttttagtacacttgctaaaagtctatca 19827778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 56195801 - 56195884
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgat--agaattagtacacttgctaaatatctatca 82  Q
    ||||||||||||||| |||||||  ||||||| |||  ||||||||||||||  |   ||||||||||||||||| ||||||||    
T  56195801 attgagattaacacaatcctcgtgaatacgaacttaattttattacttcgatgcatttttagtacacttgctaaaaatctatca 56195884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 34319764 - 34319682
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatag-aattagtacacttgct-aaatatctatcaca 84  Q
    ||||||||||||||||||||||| |  ||||   ||| |||| ||||||||||| | |||||||||||||| ||||||||||||||    
T  34319764 attgagattaacacagtcctcgtgggaacga---tatttttactacttcgatagtatttagtacacttgctaaaatatctatcaca 34319682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 37103055 - 37103009
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattactt 48  Q
    ||||||||||||||||||||||| |||||||| |||| ||||||||||    
T  37103055 attgagattaacacagtcctcgtggatacgaacttat-tttattactt 37103009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 15429693 - 15429640
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatag 54  Q
    |||||||||||  |||||||||| |||||||| |||| |||| |||||||||||    
T  15429693 attgagattaaatcagtcctcgtggatacgaacttatttttactacttcgatag 15429640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 15436307 - 15436254
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatag 54  Q
    |||||||||||  |||||||||| |||||||| |||| |||| |||||||||||    
T  15436307 attgagattaaatcagtcctcgtggatacgaacttatttttactacttcgatag 15436254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 82
Target Start/End: Complemental strand, 22172217 - 22172188
Alignment:
Q  53 agaattagtacacttgctaaatatctatca 82  Q
    ||||||||||||||||||||||||||||||    
T  22172217 agaattagtacacttgctaaatatctatca 22172188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 2542061 - 2542128
Alignment:
Q  13 acagtcctcgtagatacgaatttatatttattacttcgatagaattag-tacacttgctaaatatctatca 82  Q
    ||||||||||| ||||||||||   ||||||||||||||| || || | ||||||||| ||||||||||||    
T  2542061 acagtcctcgtggatacgaatt---atttattacttcgattgactttggtacacttgccaaatatctatca 2542128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 44808802 - 44808723
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatag-aattagtacacttgctaaatatctatca 82  Q
    ||||||||||||||||||||||| |  ||||   ||| |||| ||||||||||| | |||||||||||||||||  |||||||    
T  44808802 attgagattaacacagtcctcgtgggaacga---tatttttactacttcgatagtatttagtacacttgctaaaagtctatca 44808723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 223989 - 224068
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaatatctatca 82  Q
    |||||||||||||||||||| |||||||||| |||| ||||||||||||||||  |||||||||||||||||  |||||||    
T  223989 ttgagattaacacagtcctcatagatacgaacttat-tttattacttcgatagttttagtacacttgctaaaagtctatca 224068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 228915 - 228994
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaatatctatca 82  Q
    ||||||||||||||||||||||  ||||||| |||| ||||||||||||||||  |||||||||||||||||  |||||||    
T  228915 ttgagattaacacagtcctcgtgcatacgaacttat-tttattacttcgatagttttagtacacttgctaaaagtctatca 228994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 31981630 - 31981709
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaatatctatca 82  Q
    |||||||||||||||||||| |||||||||| |||| ||||||||||||||||  |||||||||||||||||  |||||||    
T  31981630 ttgagattaacacagtcctcatagatacgaacttat-tttattacttcgatagttttagtacacttgctaaaagtctatca 31981709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 14589468 - 14589387
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaatatctatca 82  Q
    |||||||||||||||||||||||  ||||||| |||  |||||||||||||||   ||||||||||||||||| ||||||||    
T  14589468 attgagattaacacagtcctcgtgaatacgaacttaattttattacttcgataattttagtacacttgctaaaaatctatca 14589387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 31986557 - 31986636
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaatatctatca 82  Q
    ||||||||||||||||||||||  ||||||| |||| ||||||||||||||||  |||||||||||||||||  |||||||    
T  31986557 ttgagattaacacagtcctcgtgcatacgaacttat-tttattacttcgatagttttagtacacttgctaaaagtctatca 31986636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 14188441 - 14188511
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaa 73  Q
    ||||||||||| |||||||||| |||||||| |||| ||||||||||||||||  |||||||||||||||||    
T  14188441 ttgagattaacgcagtcctcgtggatacgaacttat-tttattacttcgatagttttagtacacttgctaaa 14188511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 30645755 - 30645825
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaa 73  Q
    |||||||||||||||||||||| |||||||| |||| |||||||||||||||   |||||||||||||||||    
T  30645755 ttgagattaacacagtcctcgtggatacgaacttat-tttattacttcgataattttagtacacttgctaaa 30645825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 18695823 - 18695744
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaatatctatca 82  Q
    |||| ||||||| ||||||||| |||||||| |||| ||||||||||||||||  ||||| ||||||||||| ||||||||    
T  18695823 ttgaaattaacatagtcctcgtggatacgaacttat-tttattacttcgatagttttagtgcacttgctaaaaatctatca 18695744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 23644093 - 23644164
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaa 73  Q
    ||||||||||||||||||||||| |||||||| |||| ||||||| ||||||||  ||||| |||||||||||    
T  23644093 attgagattaacacagtcctcgtggatacgaacttat-tttattatttcgatagttttagttcacttgctaaa 23644164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 4868524 - 4868604
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaatatctatca 82  Q
    |||| ||||||||| ||||||| |||||||| |||| ||||||||||||||||  ||||||||| || ||||  |||||||    
T  4868524 ttgatattaacacattcctcgttgatacgaacttatttttattacttcgatagttttagtacacatgttaaaagtctatca 4868604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 5538617 - 5538535
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaatt--agtacacttgctaaatatctatca 82  Q
    ||||| ||||||||||||||| | |||||||| |||| ||||||||||||||| | ||  ||||||||||||||| ||||||||    
T  5538617 attgaaattaacacagtcctcatggatacgaacttat-tttattacttcgatacatttttagtacacttgctaaaaatctatca 5538535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 5964526 - 5964605
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaatatctatca 82  Q
    |||||||||||||||||||| | |||||||| |||| ||||||||||||||||  ||| ||||||| |||||  |||||||    
T  5964526 ttgagattaacacagtcctcatggatacgaacttat-tttattacttcgatagttttaatacacttactaaaagtctatca 5964605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 33883197 - 33883114
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgat--agaattagtacacttgctaaatatctatca 82  Q
    ||||||||||||||||||||||| |||||||| |||  ||||||||||||||  |   |||||||||||||||||  |||||||    
T  33883197 attgagattaacacagtcctcgtggatacgaacttaattttattacttcgatgcatttttagtacacttgctaaaagtctatca 33883114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 14422015 - 14422065
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgat 52  Q
    ||||||||||||||||||||||| |||||||| |||| ||||||||||||||    
T  14422015 attgagattaacacagtcctcgtggatacgaacttat-tttattacttcgat 14422065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 20262825 - 20262907
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgct-aaatatctatcaca 84  Q
    ||||||||||||||||| |||| |||||||| |||  | ||||||||||||||  |||||||||||| | ||||||||||||||    
T  20262825 ttgagattaacacagtcttcgtggatacgaactta-ctgtattacttcgatagttttagtacacttgttaaaatatctatcaca 20262907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 21049455 - 21049537
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgct-aaatatctatcaca 84  Q
    ||||||||||||||||| |||| |||||||| |||  | ||||||||||||||  |||||||||||| | ||||||||||||||    
T  21049455 ttgagattaacacagtcttcgtggatacgaactta-ctgtattacttcgatagttttagtacacttgttaaaatatctatcaca 21049537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 36710484 - 36710400
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttata---tttattacttcgatagaattagtacacttgctaaatatctatca 82  Q
    |||||||||||||||||||  || |||||||| |||||   |||||||||| |||||  |||||||||||||||||  |||||||    
T  36710484 attgagattaacacagtccctgtggatacgaacttataaactttattactttgatagtcttagtacacttgctaaaagtctatca 36710400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 5980139 - 5980087
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatag 54  Q
    ||||||||||||||||||||||| |||||||| ||||  |||||||||||||||    
T  5980139 attgagattaacacagtcctcgtggatacgaacttat-gttattacttcgatag 5980087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 25231355 - 25231429
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttata---tttattacttcgatagaattagtacacttgctaaa 73  Q
    |||||||||||||||||| | || |||||||| |||||   ||||||||||||||||  |||||||||||||||||    
T  25231355 attgagattaacacagtctt-gtggatacgaacttataaaatttattacttcgatagttttagtacacttgctaaa 25231429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 45155116 - 45155041
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttata---tttattacttcgatagaattagtacacttgctaaa 73  Q
    |||||||||||||| ||||  || |||||||| |||||   ||||||||||||||||  |||||||||||||||||    
T  45155116 attgagattaacacggtccctgtggatacgaacttataaattttattacttcgatagttttagtacacttgctaaa 45155041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 10664224 - 10664303
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatag-aattagtacacttgctaaatatctatca 82  Q
    ||||||||||||||||||||||| |  ||||   ||| |||| ||||||||||| | ||||||||||||||||| ||||||||    
T  10664224 attgagattaacacagtcctcgtgggaacga---tatttttactacttcgatagtatttagtacacttgctaaaaatctatca 10664303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 41836285 - 41836233
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgata 53  Q
    ||||||||||||||||||||| | |||||||| |||| ||||||| |||||||    
T  41836285 attgagattaacacagtcctcatggatacgaacttatttttattatttcgata 41836233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 37681368 - 37681283
Alignment:
Q  1 attgagattaacacagtcctc-gtagatacgaatttata---tttattacttcgatagaattagtacacttgctaaatatctatca 82  Q
    ||||||||||||||||||| | || ||||| || |||||   |||||||||||||||  ||||||||||||||||||  |||||||    
T  37681368 attgagattaacacagtcccctgtggatacaaacttataaattttattacttcgatattattagtacacttgctaaaagtctatca 37681283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 12575367 - 12575300
Alignment:
Q  13 acagtcctcgtagatacgaatttatatttattacttcgatagaa-ttagtacacttgctaaatatctatca 82  Q
    ||||||||||| ||||||||||   ||||||||||||||| ||| || |||||||||| |||||| |||||    
T  12575367 acagtcctcgtggatacgaatt---atttattacttcgattgaatttggtacacttgccaaatatttatca 12575300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 12583293 - 12583375
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgataga--attagtacacttgctaaatatctatca 82  Q
    ||||||||||||| ||||||||| ||||| || |||| ||||||| ||||||| |   |||||||||||||||||  |||||||    
T  12583293 attgagattaacatagtcctcgtggatacaaacttat-tttattatttcgatacatttttagtacacttgctaaaagtctatca 12583375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 14966500 - 14966579
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaatatctatca 82  Q
    |||||||||||||||||||||| |||||||| |||| ||||||||||||||||  |||||||||||||||||  |||||||    
T  14966500 ttgagattaacacagtcctcgtggatacgaacttat-tttattacttcgatagttttagtacacttgctaaaagtctatca 14966579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 6514271 - 6514355
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttata---tttattacttcgatagaattagtacacttgctaaatatctatca 82  Q
    |||||||||||||||||||| ||||||||||| |||||   ||||||||||||||||  |||||||||||||||||  |||||||    
T  6514271 attgagattaacacagtccttgtagatacgaacttataaattttattacttcgatagttttagtacacttgctaaaagtctatca 6514355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 24371493 - 24371575
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaatatctatcac 83  Q
    ||||||||||||||||||||||| |||||||| |||| |||||||||||||||   |||||||||||| ||||  ||||||||    
T  24371493 attgagattaacacagtcctcgtggatacgaacttatttttattacttcgataattttagtacacttgttaaaattctatcac 24371575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 34502622 - 34502702
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgct-aaatatctatca 82  Q
    |||||||||||||||||||||| |||||||| |||| |||| |||||||||||  |||||||||||||| ||||||||||||    
T  34502622 ttgagattaacacagtcctcgtggatacgaacttat-tttactacttcgatagttttagtacacttgctaaaatatctatca 34502702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 5618055 - 5617985
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaa 73  Q
    |||||||||||||||||||||| ||||| || |||| ||||||||||||||||  |||||||||||||||||    
T  5618055 ttgagattaacacagtcctcgtggatacaaacttat-tttattacttcgatagttttagtacacttgctaaa 5617985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 14969980 - 14970059
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaatatctatca 82  Q
    |||||||||||| ||||||| | |||||||| |||| ||||||||||||||||  |||||||||||||||||  |||||||    
T  14969980 ttgagattaacatagtcctcatggatacgaacttat-tttattacttcgatagttttagtacacttgctaaaagtctatca 14970059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 3826668 - 3826598
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaa 73  Q
    ||||||||||||||||||| || |||||||| |||| || |||||||||||||  |||||||||||||||||    
T  3826668 ttgagattaacacagtccttgtggatacgaacttatctt-attacttcgatagttttagtacacttgctaaa 3826598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 9839246 - 9839165
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagt-acacttgctaaatatctatca 82  Q
    |||||||||||||| ||||||| | |||||| |||| |||||||||||||||| ||| || |||||||| |||| |||||||    
T  9839246 ttgagattaacacaatcctcgtgggtacgaaattatttttattacttcgatagtatttgtgacacttgccaaatctctatca 9839165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 23008335 - 23008408
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatag-aattagtacacttgctaaa 73  Q
    ||||||||||||||||||||| | |||||||  ||| ||||| ||||||||||| | |||||||||||||||||    
T  23008335 attgagattaacacagtcctcatggatacgatcttagatttactacttcgatagtatttagtacacttgctaaa 23008408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 23780029 - 23779956
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatag-aattagtacacttgctaaa 73  Q
    ||||||||||||||||||||| | |||||||  ||| ||||| ||||||||||| | |||||||||||||||||    
T  23780029 attgagattaacacagtcctcatggatacgatcttagatttactacttcgatagtatttagtacacttgctaaa 23779956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 28111652 - 28111577
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttata---tttattacttcgatagaattagtacacttgctaaa 73  Q
    |||||||||||||||||||  || |||||||| |||||   ||||||||||||||||  |||||||||||||||||    
T  28111652 attgagattaacacagtccatgtggatacgaacttataaattttattacttcgatagttttagtacacttgctaaa 28111577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 10290261 - 10290334
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgataga--attagtacacttgctaaa 73  Q
    ||||||||||||||||||||||| ||||| || |||| ||||||||||||||| |   |||||||||||||||||    
T  10290261 attgagattaacacagtcctcgtggatacaaacttat-tttattacttcgatacatttttagtacacttgctaaa 10290334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 20186020 - 20186070
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgata 53  Q
    |||||||||||||||||||||| |||||||| |||| |||||||||||||||    
T  20186020 ttgagattaacacagtcctcgtggatacgaacttat-tttattacttcgata 20186070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 22149971 - 22149921
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgata 53  Q
    |||||||||||||||||||||| |||||||| |||| |||||||||||||||    
T  22149971 ttgagattaacacagtcctcgtggatacgaacttat-tttattacttcgata 22149921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 5260085 - 5260169
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttata---tttattacttcgatagaattagtacacttgctaaatatctatca 82  Q
    ||||||||||||| |||||| || |||||||| |||||   ||||||||||||||||  |||||||| ||||||||  |||||||    
T  5260085 attgagattaacatagtccttgtggatacgaacttataaattttattacttcgatagttttagtacatttgctaaaagtctatca 5260169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 11192429 - 11192348
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaatt-agtacacttgctaaatatctatca 82  Q
    ||||||||||||| || ||||| || ||||| |||  | ||||||||||||||  || ||||||||||||||||||||||||    
T  11192429 ttgagattaacacggtactcgtggaaacgaacttaattgtattacttcgatagtttttagtacacttgctaaatatctatca 11192348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 23842636 - 23842584
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatag 54  Q
    ||||||||||||||||||||||| |||||||| |||| ||||||| ||||||||    
T  23842636 attgagattaacacagtcctcgtggatacgaacttat-tttattatttcgatag 23842584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 13095568 - 13095498
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaa 73  Q
    |||||||||||| |||| |||| ||||| || |||| ||||||||||||||||  |||||||| ||||||||    
T  13095568 ttgagattaacaaagtcatcgtggatacaaacttat-tttattacttcgatagttttagtacatttgctaaa 13095498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 17106466 - 17106393
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgataga--attagtacacttgctaaa 73  Q
    |||||||||||||| ||| |||| |||||||| |||| ||||||||||||||| |   |||||||||||||||||    
T  17106466 attgagattaacactgtcttcgtggatacgaacttat-tttattacttcgatacatttttagtacacttgctaaa 17106393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 23382017 - 23381947
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatag-aattagtacacttgctaaa 73  Q
    ||||||||||||||||||||||| |  ||||   ||| |||||||||||||||| | |||||||||||||||||    
T  23382017 attgagattaacacagtcctcgtgggaacga---tatttttattacttcgatagtatttagtacacttgctaaa 23381947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 7559932 - 7559850
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgat-agaattagtacacttgctaaatatctatca 82  Q
    ||||||||||| |||||| |||| || ||||| |||| |||||||||||||| | | ||||||||||||  |||||| |||||    
T  7559932 attgagattaaaacagtcttcgtggaaacgaacttatctttattacttcgatcaaatttagtacacttgtcaaatatttatca 7559850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 9954239 - 9954319
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatag-aattagtacacttgct-aaatatctatca 82  Q
    ||||||||||||||||||||||| |  ||||   ||| |||| ||||||||||| | |||||||||||||| ||||||||||||    
T  9954239 attgagattaacacagtcctcgtgggaacga---tatttttactacttcgatagtatttagtacacttgctaaaatatctatca 9954319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 13005468 - 13005543
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttata---tttattacttcgatagaattagtacacttgctaaa 73  Q
    |||||||||||||||  ||  || |||||||| |||||   ||||||||||||||||  |||||||||||||||||    
T  13005468 attgagattaacacaacccatgtggatacgaacttataaattttattacttcgatagttttagtacacttgctaaa 13005543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 23848058 - 23848110
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatag 54  Q
    ||||||||||||||||||||||| |||||||| |||| |||||||  |||||||    
T  23848058 attgagattaacacagtcctcgtggatacgaacttat-tttattatgtcgatag 23848110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 28107600 - 28107525
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttata---tttattacttcgatagaattagtacacttgctaaa 73  Q
    ||||||||||||||| |||  || |||||||| |||||   ||||||||||||||||  |||||||||||| ||||    
T  28107600 attgagattaacacaatccctgtggatacgaacttataaattttattacttcgatagttttagtacacttgttaaa 28107525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 32427480 - 32427546
Alignment:
Q  16 gtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaatatctatcaca 84  Q
    |||||||||||||| |||||||  |||||||||||||||  || || ||||| | ||||||||||||||    
T  32427480 gtcctcgtagatacaaatttat--ttattacttcgatagttttggttcacttaccaaatatctatcaca 32427546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 67679 - 67600
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaatatctatca 82  Q
    |||||||||||||||||||||| |||||||| |||| ||||||||||| ||||  |||||||||||| |||| ||||||||    
T  67679 ttgagattaacacagtcctcgtggatacgaacttat-tttattacttccatagttttagtacacttggtaaaaatctatca 67600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 52730 - 52651
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaatatctatca 82  Q
    |||| ||||||| ||||||||| |||||||| |||| ||||||||||||||||  ||||| ||||||||||| ||||||||    
T  52730 ttgaaattaacatagtcctcgtggatacgaacttat-tttattacttcgatagttttagtgcacttgctaaaaatctatca 52651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0996 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 1767 - 1682
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttata---tttattacttcgatagaattagtacacttgctaaatatctatcac 83  Q
    |||||||||||||||||||| || |||||||| |||||   ||||||||||||||||  |||||||||||||||||  ||||||||    
T  1767 attgagattaacacagtccttgtggatacgaacttataaattttattacttcgatagttttagtacacttgctaaaattctatcac 1682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 6555 - 6625
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaa 73  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||   |||||||||||| ||||    
T  6555 ttgagattaacacagtcctcgtggatacgaatttat-tttattacttcgatatttttagtacacttggtaaa 6625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 2723 - 2773
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgata 53  Q
    ||||||||||||||||||| || |||||||| |||| |||||||||||||||    
T  2723 ttgagattaacacagtccttgtggatacgaacttat-tttattacttcgata 2773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 10215 - 10297
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaatatctatcac 83  Q
    ||||||||||| | ||||||||| || || || |||| |||||||||| |||||  |||||||||||||||||||||||||||    
T  10215 attgagattaatagagtcctcgtggaaacaaacttatttttattactttgatagttttagtacacttgctaaatatctatcac 10297  T

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Target: scaffold0214 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 13887 - 13967
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgct-aaatatctatca 82  Q
    |||||||||||||||||||||| |||||||| |||| ||||||||||||||||   | ||||||||||| ||||||||||||    
T  13887 ttgagattaacacagtcctcgtggatacgaacttat-tttattacttcgatagttcttgtacacttgctaaaatatctatca 13967  T

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Target: scaffold0214; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 20337 - 20417
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgct-aaatatctatca 82  Q
    |||||||||||||||||||||| |||| ||| |||| |||||||||||| |||  |||||||||||||| ||||||||||||    
T  20337 ttgagattaacacagtcctcgtggatatgaacttat-tttattacttcggtagttttagtacacttgctaaaatatctatca 20417  T

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Target: scaffold0214; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 27903 - 27983
Alignment:
Q  2 ttgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgct-aaatatctatca 82  Q
    |||||||||||||||||||||| |||||||| |||| ||||||||||||||||   | ||||||||||| ||||||||||||    
T  27903 ttgagattaacacagtcctcgtggatacgaacttat-tttattacttcgatagttcttgtacacttgctaaaatatctatca 27983  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 2405796 - 2405869
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgataga--attagtacacttgctaaa 73  Q
    ||||||||||||||||||||||| |||||||| |||| ||||||||||||||| |   |||||||||||||||||    
T  2405796 attgagattaacacagtcctcgtggatacgaacttat-tttattacttcgatacatttttagtacacttgctaaa 2405869  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 30938371 - 30938328
Alignment:
Q  39 tttattacttcgatagaattagtacacttgctaaatatctatca 82  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||    
T  30938371 tttattacttcaatagaattagtacacttactaaatatctatca 30938328  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 29643068 - 29643021
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttc 49  Q
    ||||||||||||||||||||||| |||||||| |||| |||||||||||    
T  29643068 attgagattaacacagtcctcgtggatacgaacttat-tttattacttc 29643021  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 42022915 - 42022962
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttc 49  Q
    ||||||||||||||||||||||| |||||||| |||| |||||||||||    
T  42022915 attgagattaacacagtcctcgtggatacgaacttat-tttattacttc 42022962  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 21018304 - 21018254
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgat 52  Q
    |||||| |||||||||||||||| |||||||| |||| ||||||||||||||    
T  21018304 attgaggttaacacagtcctcgtggatacgaacttat-tttattacttcgat 21018254  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 28111333 - 28111413
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatag-aattagtacacttgct-aaatatctatca 82  Q
    ||||||||||||||||||||||| |  ||||   ||| |||| ||||||||||| | |||||||||||||| ||||||||||||    
T  28111333 attgagattaacacagtcctcgtgggaacga---tatttttactacttcgatagtatttagtacacttgctaaaatatctatca 28111413  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 41058139 - 41058095
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattac 46  Q
    ||||||||||||||||||||||| |||||||| |||| ||||||||    
T  41058139 attgagattaacacagtcctcgtggatacgaacttat-tttattac 41058095  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 21110995 - 21110913
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgat--agaattagtacacttgctaaatatctatca 82  Q
    ||||||| ||||||||||||||| ||||||||  ||| ||||||||||||||  |   |||||||||||||||||  |||||||    
T  21110995 attgagagtaacacagtcctcgtggatacgaacatat-tttattacttcgatgcatttttagtacacttgctaaaagtctatca 21110913  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 28138647 - 28138603
Alignment:
Q  39 tttattacttcgatagaa-ttagtacacttgctaaatatctatca 82  Q
    ||||||||||||||| || |||||||||||||||| |||||||||    
T  28138647 tttattacttcgatataagttagtacacttgctaattatctatca 28138603  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 28141897 - 28141853
Alignment:
Q  39 tttattacttcgatagaa-ttagtacacttgctaaatatctatca 82  Q
    ||||||||||||||| || |||||||||||||||| |||||||||    
T  28141897 tttattacttcgatataagttagtacacttgctaattatctatca 28141853  T

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Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 99081 - 99008
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgat-agaattagtacacttgctaaa 73  Q
    ||||||||||||||  |||||||||||||||| |||| |||||||||||||| |   |||||||||||||||||    
T  99081 attgagattaacaccatcctcgtagatacgaaattatttttattacttcgataatttttagtacacttgctaaa 99008  T

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Target: scaffold0002; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 118295 - 118242
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatag 54  Q
    ||||||||||||||| ||||||| |||||||| |||| ||||||||||||||||    
T  118295 attgagattaacacaatcctcgtggatacgaacttatttttattacttcgatag 118242  T

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Target: scaffold0002; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 468303 - 468224
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatagaattagtacacttgctaaatatctat 80  Q
    ||||||||||||||||| ||| | ||||| || ||| | |||||||||| ||||| |||||| ||||| |||||||||||    
T  468303 attgagattaacacagtactcattgatacaaacttagaattattacttcaatagatttagtatacttgttaaatatctat 468224  T

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Target: scaffold1063 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 2772 - 2854
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgat--agaattagtacacttgctaaatatctatca 82  Q
    ||||||||||||||||||||||| |||||||| |||| ||||||||||||||  |   |||||||||||||||||  |||||||    
T  2772 attgagattaacacagtcctcgtggatacgaacttat-tttattacttcgatgcatttttagtacacttgctaaaagtctatca 2854  T

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Target: scaffold0757 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 5637 - 5719
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgat--agaattagtacacttgctaaatatctatca 82  Q
    ||||||||||| ||||||||||| |||||||| |||| ||||||||||||||  ||  |||||||||||||||||  |||||||    
T  5637 attgagattaaaacagtcctcgtggatacgaacttat-tttattacttcgatgcagttttagtacacttgctaaaagtctatca 5719  T

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Target: scaffold0080 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 27396 - 27478
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgat--agaattagtacacttgctaaatatctatca 82  Q
    ||||||||||||||||||||||| |||||||| |||| ||||||||||||||  |   |||||||||||||||||  |||||||    
T  27396 attgagattaacacagtcctcgtggatacgaacttat-tttattacttcgatgcatttttagtacacttgctaaaagtctatca 27478  T

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Target: scaffold0045 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 90045 - 90127
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgat--agaattagtacacttgctaaatatctatca 82  Q
    ||||||||||||||||||||||| ||||| || |||| ||||||||||||||  |   |||||||||||||||||  |||||||    
T  90045 attgagattaacacagtcctcgtggatacaaacttat-tttattacttcgatgcatttttagtacacttgctaaaagtctatca 90127  T

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Target: scaffold0520 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 1386 - 1302
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgat--agaattagtacacttgctaaatatctatcaca 84  Q
    ||||||||||||| ||||||||| || ||||| |||| ||||||||||||||  |   |||||||||||||||||  |||||||||    
T  1386 attgagattaacagagtcctcgtggacacgaacttat-tttattacttcgatgcatttttagtacacttgctaaaagtctatcaca 1302  T

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Target: scaffold2073 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold2073
Description:

Target: scaffold2073; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 712 - 637
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttata---tttattacttcgatagaattagtacacttgctaaa 73  Q
    |||||||||||||||||||  || |||||||| || ||   ||||| ||||||||||  |||||||||||||||||    
T  712 attgagattaacacagtccctgtggatacgaacttgtaaattttatcacttcgatagttttagtacacttgctaaa 637  T

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Target: scaffold0962 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0962
Description:

Target: scaffold0962; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 3128 - 3048
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgatag-aattagtacacttgct-aaatatctatca 82  Q
    ||||||||||||||||||||||| |  ||||   ||| |||| ||||||||||| | |||||||||||||| ||||||||||||    
T  3128 attgagattaacacagtcctcgtgggaacga---tatttttactacttcgatagtatttagtacacttgctaaaatatctatca 3048  T

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Target: scaffold0015 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 198429 - 198512
Alignment:
Q  1 attgagattaacacagtcctcgtagatacgaatttatatttattacttcgat--agaattagtacacttgct-aaatatctatca 82  Q
    ||||| ||||||||||||||||| |||||||| |||| |||||||||| |||  |   |||||||||||||| ||||||||||||    
T  198429 attgaaattaacacagtcctcgtggatacgaacttat-tttattactttgatgcatttttagtacacttgctaaaatatctatca 198512  T

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Target: scaffold0884 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0884
Description:

Target: scaffold0884; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 4333 - 4289
Alignment:
Q  39 tttattacttcgatagaa-ttagtacacttgctaaatatctatca 82  Q
    ||||||||||||||| || |||||||||||||||| |||||||||    
T  4333 tttattacttcgatataagttagtacacttgctaattatctatca 4289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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