View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14243_low_17 (Length: 261)
Name: NF14243_low_17
Description: NF14243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14243_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 27 - 251
Target Start/End: Complemental strand, 38744508 - 38744279
Alignment:
| Q |
27 |
ataataataagagaattttgagagataataaataaatcactaaccgcagaaattgtgggttgaattgaacgctgaaagaatcgagattcggatgttgcag |
126 |
Q |
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| T |
38744508 |
ataataataagagaattttgagagataataaataaatcactaaccgcagaaattgtgggttgaattgaacgctgaaagaatcgagattcggatgttgcag |
38744409 |
T |
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| Q |
127 |
cggcaccgctctgctatacaagagaagaga-----agagtatgctttggaaaatcctaaactacccttttggacacgtgtcacactctggtttcaatttt |
221 |
Q |
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| T |
38744408 |
cggcaccgctctgctatacaagagaagagaagagaagagtatgctttggaaaatcctaaactacccttttggacacgtgtcacactctggttttaatttt |
38744309 |
T |
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| Q |
222 |
gaagattttgctgttcttttattttatttt |
251 |
Q |
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| T |
38744308 |
gaagattttgctgttcttttattttatttt |
38744279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 40190407 - 40190371
Alignment:
| Q |
82 |
tgggttgaattgaacgctgaaagaatcgagattcgga |
118 |
Q |
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| T |
40190407 |
tgggttgaattgaacgctgaaagaatcgagattcgga |
40190371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 116
Target Start/End: Complemental strand, 42900009 - 42899975
Alignment:
| Q |
82 |
tgggttgaattgaacgctgaaagaatcgagattcg |
116 |
Q |
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| T |
42900009 |
tgggttgaattgaacgctgaaagaatcaagattcg |
42899975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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