View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14243_low_22 (Length: 238)

Name: NF14243_low_22
Description: NF14243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14243_low_22
NF14243_low_22
[»] chr8 (5 HSPs)
chr8 (127-238)||(9410789-9410900)
chr8 (21-79)||(9409738-9409796)
chr8 (21-79)||(11789632-11789690)
chr8 (21-79)||(24728788-24728846)
chr8 (37-76)||(13003199-13003238)
[»] chr4 (4 HSPs)
chr4 (21-78)||(2295181-2295238)
chr4 (20-79)||(38948720-38948779)
chr4 (21-81)||(40216802-40216862)
chr4 (23-79)||(53586219-53586275)
[»] chr2 (7 HSPs)
chr2 (21-81)||(35298252-35298312)
chr2 (22-79)||(38221872-38221929)
chr2 (23-79)||(42795000-42795056)
chr2 (30-81)||(36467024-36467075)
chr2 (22-80)||(17328525-17328583)
chr2 (21-79)||(21812172-21812230)
chr2 (21-77)||(14749375-14749431)
[»] chr7 (3 HSPs)
chr7 (21-79)||(42040716-42040774)
chr7 (18-80)||(25311318-25311380)
chr7 (21-79)||(48152836-48152894)
[»] chr6 (4 HSPs)
chr6 (21-79)||(2032615-2032673)
chr6 (22-79)||(12283952-12284009)
chr6 (22-81)||(2988384-2988443)
chr6 (21-76)||(17533652-17533707)
[»] chr5 (4 HSPs)
chr5 (21-79)||(29231336-29231394)
chr5 (21-79)||(8229137-8229195)
chr5 (21-79)||(27925151-27925209)
chr5 (19-76)||(7056908-7056965)
[»] chr1 (7 HSPs)
chr1 (30-79)||(40693745-40693794)
chr1 (23-65)||(41827539-41827581)
chr1 (23-75)||(17116056-17116108)
chr1 (23-73)||(4973348-4973398)
chr1 (22-75)||(11767908-11767961)
chr1 (18-76)||(38683182-38683240)
chr1 (21-79)||(50726469-50726527)
[»] chr3 (3 HSPs)
chr3 (19-79)||(45472417-45472477)
chr3 (22-79)||(35433311-35433368)
chr3 (21-68)||(7629447-7629495)
[»] scaffold0565 (1 HSPs)
scaffold0565 (22-76)||(7710-7764)


Alignment Details
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 127 - 238
Target Start/End: Original strand, 9410789 - 9410900
Alignment:
127 tagcaaatatataaaaatttctaaaccttcactcttttccactaaaaaatttataacctatagaagtttaggcaactaacggcatcgtggaaagatccga 226  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
9410789 tagcaagtatataaaaatttctaaactttcactcttttccactaaaaaatttataacctatagaagtttaggcaactaccggcatcgtggaaagatccga 9410888  T
227 gacaaatatacc 238  Q
    ||||||||||||    
9410889 gacaaatatacc 9410900  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 9409738 - 9409796
Alignment:
21 ggatactccaaaacagagacgtacccgtaccgaatacgtatcggataccgatactccac 79  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
9409738 ggatattccaaaacagagacgtacccgtaccgaatacgtatcggataccgatactccac 9409796  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 11789690 - 11789632
Alignment:
21 ggatactccaaaacagagacgtacccgtaccgaatacgtatcggataccgatactccac 79  Q
    |||||||||||||| ||||||| ||||||||  ||||||||| ||||||||||||||||    
11789690 ggatactccaaaacggagacgtgcccgtaccagatacgtatcagataccgatactccac 11789632  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 24728846 - 24728788
Alignment:
21 ggatactccaaaacagagacgtacccgtaccgaatacgtatcggataccgatactccac 79  Q
    |||||||||||||| ||||||||| |||| || ||||||||| |||||| |||||||||    
24728846 ggatactccaaaacggagacgtactcgtatcggatacgtatcagataccaatactccac 24728788  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 13003199 - 13003238
Alignment:
37 agacgtacccgtaccgaatacgtatcggataccgatactc 76  Q
    ||||||||||||| | ||||||||||||||||||||||||    
13003199 agacgtacccgtatcaaatacgtatcggataccgatactc 13003238  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 2295181 - 2295238
Alignment:
21 ggatactccaaaacagagacgtacccgtaccgaatacgtatcggataccgatactcca 78  Q
    |||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||    
2295181 ggatactcaaaaacagagacgtacccgtaccggatacgtgtcggataccgatactcca 2295238  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 38948779 - 38948720
Alignment:
20 tggatactccaaaacagagacgtacccgtaccgaatacgtatcggataccgatactccac 79  Q
    ||||||||||||||  |||||||| |||||  | ||||||||||||||||||||||||||    
38948779 tggatactccaaaatggagacgtatccgtattggatacgtatcggataccgatactccac 38948720  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 40216802 - 40216862
Alignment:
21 ggatactccaaaacagagacgtacccgtaccgaatacgtatcggataccgatactccacag 81  Q
    ||||||||||||||||| || |||||||| || ||| |||||||||| |||||| ||||||    
40216802 ggatactccaaaacagaaacatacccgtatcggatatgtatcggatatcgataccccacag 40216862  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 53586219 - 53586275
Alignment:
23 atactccaaaacagagacgtacccgtaccgaatacgtatcggataccgatactccac 79  Q
    |||||||||||| | |||||||||||| |  |||||||||| |||||||||| ||||    
53586219 atactccaaaacggtgacgtacccgtatcagatacgtatcgaataccgatacgccac 53586275  T

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Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 35298252 - 35298312
Alignment:
21 ggatactccaaaacagagacgtacccgtaccgaatacgtatcggataccgatactccacag 81  Q
    ||||||||||||||| ||||||||| ||| || ||||||||||||||||||||||||||||    
35298252 ggatactccaaaacaaagacgtacctgtatcggatacgtatcggataccgatactccacag 35298312  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 38221929 - 38221872
Alignment:
22 gatactccaaaacagagacgtacccgtaccgaatacgtatcggataccgatactccac 79  Q
    ||||||||||||| |||||||||||||| || |||||||| |||||||||||||||||    
38221929 gatactccaaaacggagacgtacccgtatcggatacgtattggataccgatactccac 38221872  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 42795056 - 42795000
Alignment:
23 atactccaaaacagagacgtacccgtaccgaatacgtatcggataccgatactccac 79  Q
    |||||||||||| ||||||||||| ||| | |||||||| | |||||||||||||||    
42795056 atactccaaaacggagacgtacccatactggatacgtatggaataccgatactccac 42795000  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 36467024 - 36467075
Alignment:
30 aaaacagagacgtacccgtaccgaatacgtatcggataccgatactccacag 81  Q
    ||||| ||||||||||| || || ||| ||||||||||||||||||||||||    
36467024 aaaacggagacgtacccatatcggatatgtatcggataccgatactccacag 36467075  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 17328525 - 17328583
Alignment:
22 gatactccaaaacagagacgtacccgtaccgaatacgtatcggataccgatactccaca 80  Q
    ||||||||||||| |||||||||||| | || ||| || || |||||||||||||||||    
17328525 gatactccaaaacggagacgtacccgcatcggatatgtttcagataccgatactccaca 17328583  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 21812172 - 21812230
Alignment:
21 ggatactccaaaacagagacgtacccgtaccgaatacgtatcggataccgatactccac 79  Q
    ||||||||||||| | |||| || ||||| || ||||||||| ||||||||||||||||    
21812172 ggatactccaaaataaagacatatccgtatcggatacgtatcagataccgatactccac 21812230  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 14749375 - 14749431
Alignment:
21 ggatactccaaaacagagacgtacccgtaccgaatacgtatcggataccgatactcc 77  Q
    |||||| ||||||  |||||||||| |||| | ||||||||||||| ||||||||||    
14749375 ggataccccaaaatggagacgtacctgtactggatacgtatcggattccgatactcc 14749431  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 42040774 - 42040716
Alignment:
21 ggatactccaaaacagagacgtacccgtaccgaatacgtatcggataccgatactccac 79  Q
    |||||||||||||| ||||||||| ||||||| ||||||||| ||||||||||||||||    
42040774 ggatactccaaaacggagacgtactcgtaccggatacgtatcagataccgatactccac 42040716  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 25311380 - 25311318
Alignment:
18 cctggatactccaaaacagagacgtacccgtaccgaatacgtatcggataccgatactccaca 80  Q
    ||||||||||||||||| |||||||||||||| || |||| |||  ||||| |||||||||||    
25311380 cctggatactccaaaacggagacgtacccgtatcggatacatattagatactgatactccaca 25311318  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 48152836 - 48152894
Alignment:
21 ggatactccaaaacagagacgtacccgtaccgaatacgtatcggataccgatactccac 79  Q
    |||||||||||||| |||||||| | ||| || |||||||| |||||| ||||||||||    
48152836 ggatactccaaaacggagacgtatctgtatcggatacgtattggatactgatactccac 48152894  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 2032673 - 2032615
Alignment:
21 ggatactccaaaacagagacgtacccgtaccgaatacgtatcggataccgatactccac 79  Q
    ||||||| |||||| |||| |||| ||||||||||||||||||||||||||||||||||    
2032673 ggatactacaaaacggagatgtactcgtaccgaatacgtatcggataccgatactccac 2032615  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 12284009 - 12283952
Alignment:
22 gatactccaaaacagagacgtacccgtaccgaatacgtatcggataccgatactccac 79  Q
    ||||||||||||   ||||||| ||||| || ||||||||||||||||||||||||||    
12284009 gatactccaaaatgaagacgtatccgtatcggatacgtatcggataccgatactccac 12283952  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 2988443 - 2988384
Alignment:
22 gatactccaaaacagagacgtacccgtaccgaatacgtatcggataccgatactccacag 81  Q
    ||||||||||||||||||||||| ||||    ||||||||| ||||| ||||||||||||    
2988443 gatactccaaaacagagacgtactcgtattagatacgtatcagatactgatactccacag 2988384  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 17533707 - 17533652
Alignment:
21 ggatactccaaaacagagacgtacccgtaccgaatacgtatcggataccgatactc 76  Q
    ||||||| |||||  ||||||| |||||| |||||| |||||||||||||||||||    
17533707 ggatacttcaaaatggagacgtgcccgtaacgaatatgtatcggataccgatactc 17533652  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 29231394 - 29231336
Alignment:
21 ggatactccaaaacagagacgtacccgtaccgaatacgtatcggataccgatactccac 79  Q
    |||||||||||||| |||| || ||||||||| ||||||||||||||||||||||||||    
29231394 ggatactccaaaacggagatgtgcccgtaccggatacgtatcggataccgatactccac 29231336  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 8229137 - 8229195
Alignment:
21 ggatactccaaaacagagacgtacccgtaccgaatacgtatcggataccgatactccac 79  Q
    |||||| ||||||| |||||||||||||| || ||||||||| ||||||||||||||||    
8229137 ggataccccaaaacggagacgtacccgtatcggatacgtatcagataccgatactccac 8229195  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 27925151 - 27925209
Alignment:
21 ggatactccaaaacagagacgtacccgtaccgaatacgtatcggataccgatactccac 79  Q
    |||||||||||||||||||||||| |||| || ||||||||| ||||||||| ||||||    
27925151 ggatactccaaaacagagacgtactcgtatcggatacgtatcagataccgatcctccac 27925209  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 7056908 - 7056965
Alignment:
19 ctggatactccaaaacagagacgtacccgtaccgaatacgtatcggataccgatactc 76  Q
    |||||||||||||||| |||||||||| ||| |  ||| |||||||||||||||||||    
7056908 ctggatactccaaaacggagacgtacctgtatcagataagtatcggataccgatactc 7056965  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 40693745 - 40693794
Alignment:
30 aaaacagagacgtacccgtaccgaatacgtatcggataccgatactccac 79  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||    
40693745 aaaacagagacgtacctgtaccggatacgtatcggataccgatactccac 40693794  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 41827539 - 41827581
Alignment:
23 atactccaaaacagagacgtacccgtaccgaatacgtatcgga 65  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
41827539 atactccaaaacggagacgtacccgtaccgaatacgtatcgga 41827581  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 17116056 - 17116108
Alignment:
23 atactccaaaacagagacgtacccgtaccgaatacgtatcggataccgatact 75  Q
    |||||||||||| ||||||||| ||||||  ||||||||||||||||||||||    
17116056 atactccaaaacggagacgtacacgtaccagatacgtatcggataccgatact 17116108  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 4973398 - 4973348
Alignment:
23 atactccaaaacagagacgtacccgtaccgaatacgtatcggataccgata 73  Q
    |||||||||||| |||||||||||||| | ||||||||| |||||||||||    
4973398 atactccaaaacggagacgtacccgtatcaaatacgtattggataccgata 4973348  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 11767961 - 11767908
Alignment:
22 gatactccaaaacagagacgtacccgtaccgaatacgtatcggataccgatact 75  Q
    ||||||| ||||| ||||||||||||||  | ||||||||||||||||||||||    
11767961 gatactctaaaacggagacgtacccgtattggatacgtatcggataccgatact 11767908  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 38683240 - 38683182
Alignment:
18 cctggatactccaaaacagagacgtacccgtaccgaatacgtatcggataccgatactc 76  Q
    |||| |||||||||||| |||||||||  ||| |||||| |||||||| ||||||||||    
38683240 cctgaatactccaaaacggagacgtacttgtatcgaatatgtatcggacaccgatactc 38683182  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 50726469 - 50726527
Alignment:
21 ggatactccaaaacagagacgtacccgtaccgaatacgtatcggataccgatactccac 79  Q
    ||||||| ||| ||||||||||||||||| || |||||||||  ||||||||| |||||    
50726469 ggatacttcaagacagagacgtacccgtatcggatacgtatcatataccgatattccac 50726527  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 45472417 - 45472477
Alignment:
19 ctggatactccaaaacagagacgtacccgtaccgaatacgtatcggataccgatactccac 79  Q
    ||||||||| |||||| ||||||||| |||| |  ||||||||||||||||||||||||||    
45472417 ctggatacttcaaaacggagacgtactcgtatccgatacgtatcggataccgatactccac 45472477  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 35433311 - 35433368
Alignment:
22 gatactccaaaacagagacgtacccgtaccgaatacgtatcggataccgatactccac 79  Q
    ||||| ||||||  ||||||||||||||| | ||||||||||||| ||||||||||||    
35433311 gataccccaaaatggagacgtacccgtactggatacgtatcggattccgatactccac 35433368  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 7629495 - 7629447
Alignment:
21 ggatactccaaaacagagacgt-acccgtaccgaatacgtatcggatac 68  Q
    |||||||||||||| ||||||| |||||||||| ||| |||||||||||    
7629495 ggatactccaaaacggagacgtaacccgtaccggatatgtatcggatac 7629447  T

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Target: scaffold0565 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 7710 - 7764
Alignment:
22 gatactccaaaacagagacgtacccgtaccgaatacgtatcggataccgatactc 76  Q
    |||||| |||||| |||||||| ||||| || ||||||||| |||||||||||||    
7710 gatacttcaaaacggagacgtatccgtatcggatacgtatcagataccgatactc 7764  T

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