View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14243_low_23 (Length: 237)

Name: NF14243_low_23
Description: NF14243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14243_low_23
NF14243_low_23
[»] chr6 (5 HSPs)
chr6 (54-220)||(34957169-34957335)
chr6 (68-237)||(7672944-7673125)
chr6 (57-237)||(7656429-7656621)
chr6 (155-236)||(1569698-1569778)
chr6 (18-62)||(34957477-34957521)
[»] chr2 (2 HSPs)
chr2 (89-236)||(18457672-18457825)
chr2 (173-237)||(43881948-43882012)
[»] chr5 (1 HSPs)
chr5 (151-237)||(11240882-11240969)
[»] chr8 (2 HSPs)
chr8 (151-236)||(129991-130077)
chr8 (152-237)||(45482933-45483019)
[»] chr1 (1 HSPs)
chr1 (152-237)||(48735013-48735099)
[»] chr7 (1 HSPs)
chr7 (155-236)||(15746533-15746613)
[»] scaffold0604 (1 HSPs)
scaffold0604 (183-237)||(7346-7400)


Alignment Details
Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 54 - 220
Target Start/End: Complemental strand, 34957335 - 34957169
Alignment:
Q  54 tttaatgaagagtgttgtattttcatggtgcttcttgagattcaagtgaaggacgagggaaaaggagattgaagtgaggttaaggatgtgtagtgttagt 153  Q
    ||||||| |||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34957335 tttaatggagagtgttgtattttcatggtgctccgtgagattcaagtgaaggaagagggaaaaggagattgaagtgaggttaaggatgtgtagtgttagt 34957236  T
Q  154 gtgaattgctactctgcattttcagatttgggggtgtattcagcaaaaataataaaaccaatacttt 220  Q
    ||||||||||||||||| ||||||||||||  ||||||||||||||||| |||||||||||||||||    
T  34957235 gtgaattgctactctgctttttcagatttgaaggtgtattcagcaaaaacaataaaaccaatacttt 34957169  T

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Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 68 - 237
Target Start/End: Original strand, 7672944 - 7673125
Alignment:
Q  68 ttgtattttcatggtgcttct---tgagattcaagtgaaggacgagggaaaaggagattgaagtgaggttaaggatgtgtagtg--------ttagtgtg 156  Q
    |||||||||||||||||| ||   |||||||||||||||||| |||||||||||| | ||||||||| || | |||| |  |||        ||||||||    
T  7672944 ttgtattttcatggtgctcctatgtgagattcaagtgaaggaagagggaaaaggaaactgaagtgagattcatgatgaggggtgacatgttgttagtgtg 7673043  T
Q  157 aattgctactctgcattttcagatttggggg-tgtattcagcaaaaataataaaaccaatactttctattaaaatatgtttc 237  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  7673044 aattgcttctctgcattttcagatttgggggatgtattcagcaaaaacaataaaaccaatattttctattaaaatatgtttc 7673125  T

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Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 57 - 237
Target Start/End: Complemental strand, 7656621 - 7656429
Alignment:
Q  57 aatgaagagtgttgtattttcatggtgcttct---tgagattcaagtgaaggacgagggaaaaggagattgaagtgaggttaaggatgtgtagtg----- 148  Q
    |||| ||||| ||| |||| ||||||||||||   |||||||||||||||||| |||||||||||||| ||||||||| || | |||| |  |||         
T  7656621 aatggagagtcttgcatttccatggtgcttctatgtgagattcaagtgaaggaagagggaaaaggagaatgaagtgagattcatgatgaggggtgacgtg 7656522  T
Q  149 ---ttagtgtgaattgctactctgcattttcagatttg-ggggtgtattcagcaaaaataataaaaccaatactttctattaaaatatgtttc 237  Q
       |||||||||||||||||| |||||||||||||||| |||||||||| |||||||| ||||||||||||| ||||||||||||||||||||    
T  7656521 ttgttagtgtgaattgctactttgcattttcagatttgaggggtgtattaagcaaaaacaataaaaccaatattttctattaaaatatgtttc 7656429  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 1569778 - 1569698
Alignment:
Q  155 tgaattgctactctgcattttcagatttgggggtgtattcagcaaaaataataaaaccaatactttctattaaaatatgttt 236  Q
    |||||||||  ||||||||||||| ||||||||||| | ||||||||| ||||||||||||| ||||||||| |||||||||    
T  1569778 tgaattgctgttctgcattttcag-tttgggggtgtttccagcaaaaacaataaaaccaatattttctattataatatgttt 1569698  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 34957521 - 34957477
Alignment:
Q  18 ctttaattttaaagacggcataaattaacaatgagatttaatgaa 62  Q
    |||||| ||||||||| |||||||| |||||||||||||||||||    
T  34957521 ctttaagtttaaagactgcataaatcaacaatgagatttaatgaa 34957477  T

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Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 89 - 236
Target Start/End: Original strand, 18457672 - 18457825
Alignment:
Q  89 tgagattcaagtgaaggacgagggaaaaggagattgaagtgaggttaaggatgtgtag-----tgttagtgtgaattgctactctgcattttcagatttg 183  Q
    |||||||||||||||||| |||| ||||||||||||||||||| || | |||||| ||     ||||||||||||||||| |||||||||||| ||||||    
T  18457672 tgagattcaagtgaaggaagaggaaaaaggagattgaagtgagattcaagatgtgcagcgacgtgttagtgtgaattgcttctctgcattttcggatttg 18457771  T
Q  184 -ggggtgtattcagcaaaaataataaaaccaatactttct-attaaaatatgttt 236  Q
     ||||||||| ||||||||| ||||||||||||| ||||| |||| |||||||||    
T  18457772 aggggtgtatacagcaaaaacaataaaaccaata-tttctcattataatatgttt 18457825  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 43881948 - 43882012
Alignment:
Q  173 tttcagatttgggggtgtattcagcaaaaataataaaaccaatactttctattaaaatatgtttc 237  Q
    |||||| ||||||||||||| ||| ||||  |||| |||||||| |||| |||| ||||||||||    
T  43881948 tttcagttttgggggtgtatccagtaaaagcaatataaccaatattttccattataatatgtttc 43882012  T

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Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 151 - 237
Target Start/End: Original strand, 11240882 - 11240969
Alignment:
Q  151 agtgtgaattgctactctgcattttcagattt-gggggtgtattcagcaaaaataataaaaccaatactttctattaaaatatgtttc 237  Q
    |||||||||||||||||||||||| || |||| |||||||| ||||||||||| ||||||||||||| |||| |||| ||||||||||    
T  11240882 agtgtgaattgctactctgcatttccaaatttcgggggtgtcttcagcaaaaacaataaaaccaatattttccattataatatgtttc 11240969  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 129991 - 130077
Alignment:
Q  151 agtgtgaattgctactctgcattttcaga-tttgggggtgtattcagcaaaaataataaaaccaatactttctattaaaatatgttt 236  Q
    ||||||||||||||||||||||||||||| |||||||||||   ||||||||| ||||||| ||||| |||| |||| |||||||||    
T  129991 agtgtgaattgctactctgcattttcagattttgggggtgtcaccagcaaaaacaataaaatcaatattttcaattataatatgttt 130077  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 237
Target Start/End: Original strand, 45482933 - 45483019
Alignment:
Q  152 gtgtgaattgctactctgcat-tttcagatttgggggtgtattcagcaaaaataataaaaccaatactttctattaaaatatgtttc 237  Q
    ||||||||| |||||||  || ||| || ||||||||||||| ||| ||||| ||||||||||||| |||  |||| ||||||||||    
T  45482933 gtgtgaattactactctcaatgtttaagttttgggggtgtatccagaaaaaacaataaaaccaatatttttcattataatatgtttc 45483019  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 152 - 237
Target Start/End: Complemental strand, 48735099 - 48735013
Alignment:
Q  152 gtgtgaattgctactctgcattttcagatttgg-gggtgtattcagcaaaaataataaaaccaatactttctattaaaatatgtttc 237  Q
    ||||||||||||||||||||||||||| ||||| ||||||   ||||||||| ||||||||||||| |||| |||| ||||||||||    
T  48735099 gtgtgaattgctactctgcattttcagttttggagggtgtcaccagcaaaaacaataaaaccaatattttccattataatatgtttc 48735013  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 15746533 - 15746613
Alignment:
Q  155 tgaattgctactctgcattttcagatttgggggtgtattcagcaaaaataataaaaccaatactttctattaaaatatgttt 236  Q
    |||||||||  ||||||||||||| ||||||||||| | ||||||||| ||||||||||||| ||||||||| |||||||||    
T  15746533 tgaattgctgttctgcattttcag-tttgggggtgtttccagcaaaaacaataaaaccaatattttctattataatatgttt 15746613  T

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Target: scaffold0604 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 7400 - 7346
Alignment:
Q  183 gggggtgtattcagcaaaaataataaaaccaatactttctattaaaatatgtttc 237  Q
    |||||||||| ||||||||| ||||||||||||| |||| |||| ||||||||||    
T  7400 gggggtgtatccagcaaaaacaataaaaccaatattttccattataatatgtttc 7346  T

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