View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14243_low_9 (Length: 382)

Name: NF14243_low_9
Description: NF14243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14243_low_9
NF14243_low_9
[»] chr6 (2 HSPs)
chr6 (1-363)||(31805287-31805648)
chr6 (57-96)||(2493426-2493465)
[»] chr8 (4 HSPs)
chr8 (183-236)||(43816826-43816879)
chr8 (183-236)||(43831730-43831783)
chr8 (183-234)||(43824768-43824819)
chr8 (57-94)||(8017494-8017531)
[»] chr4 (3 HSPs)
chr4 (57-96)||(27096013-27096052)
chr4 (56-94)||(2976701-2976739)
chr4 (56-93)||(8457932-8457969)
[»] chr2 (1 HSPs)
chr2 (60-93)||(32843724-32843757)


Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 31805648 - 31805287
Alignment:
Q  1 acatgtatatcgaacaagacactacaatgtcgttggtcaaaatgatttgaccggtgtaataatatgataaaatgacataattgaatgtaatcattatacg 100  Q
    |||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  31805648 acatgtatatcgaacaagacactacaatgtcgttggttgaaataatttgaccggtgtaataatatgataaaatgacataattgaatgtaatcattataa- 31805550  T
Q  101 tcgacggtgtcagacgagaacacatagacattcgatcaaaagtatcggtgctaaagtgaagtagtaaaagattagtattatttacctatactgaactcaa 200  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31805549 tcgacagtgtcagacgagaacacatagacattcgatcagaagtatcggtgctaaagtgaagtagtaaaagattagtattatttacctatactgaactcaa 31805450  T
Q  201 agacgacaacaacagtaagaatagcccaaacagagtacttcccaacatccggaaacggttgtttaagaaaaatcaacaacgaaatcaaaatcaaagctaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31805449 agacgacaacaacagtaagaatagcccaaacagagtacttcccaacatccggaaacggttgtttaagaaaaatcaacaacgaaatcaaaatcaaagctaa 31805350  T
Q  301 acccatcttcgccgaaaacacaaacttccttggatcagacacacccatctcccatgctctacc 363  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31805349 acccatcttagctgaaaacacaaacttccttggatcagacacacccatctcccatgctctacc 31805287  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 96
Target Start/End: Complemental strand, 2493465 - 2493426
Alignment:
Q  57 taataatatgataaaatgacataattgaatgtaatcatta 96  Q
    ||||||| ||| ||||||||||||||||||||||||||||    
T  2493465 taataatttgacaaaatgacataattgaatgtaatcatta 2493426  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 43816826 - 43816879
Alignment:
Q  183 tacctatactgaactcaaagacgacaacaacagtaagaatagcccaaacagagt 236  Q
    ||||||||||||| |||||||| || |||||||| |||||||||||||||||||    
T  43816826 tacctatactgaattcaaagactacgacaacagttagaatagcccaaacagagt 43816879  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 43831730 - 43831783
Alignment:
Q  183 tacctatactgaactcaaagacgacaacaacagtaagaatagcccaaacagagt 236  Q
    ||||||||||||| |||||||| || ||||| || |||||||||||||||||||    
T  43831730 tacctatactgaattcaaagacaactacaacggtgagaatagcccaaacagagt 43831783  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 43824768 - 43824819
Alignment:
Q  183 tacctatactgaactcaaagacgacaacaacagtaagaatagcccaaacaga 234  Q
    ||||||||||||| ||||||||||| || || || |||||||||||||||||    
T  43824768 tacctatactgaattcaaagacgacgacgacggtgagaatagcccaaacaga 43824819  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 8017494 - 8017531
Alignment:
Q  57 taataatatgataaaatgacataattgaatgtaatcat 94  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  8017494 taataatatgaaaaaatgacataattgagtgtaatcat 8017531  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 96
Target Start/End: Complemental strand, 27096052 - 27096013
Alignment:
Q  57 taataatatgataaaatgacataattgaatgtaatcatta 96  Q
    ||||||| ||| ||||||||||||||||||||||||||||    
T  27096052 taataatttgacaaaatgacataattgaatgtaatcatta 27096013  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 94
Target Start/End: Original strand, 2976701 - 2976739
Alignment:
Q  56 gtaataatatgataaaatgacataattgaatgtaatcat 94  Q
    |||||||| ||| ||||||||||||||||||||||||||    
T  2976701 gtaataatttgagaaaatgacataattgaatgtaatcat 2976739  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 8457932 - 8457969
Alignment:
Q  56 gtaataatatgataaaatgacataattgaatgtaatca 93  Q
    |||||||| ||| |||||||||||||||||||||||||    
T  8457932 gtaataatttgagaaaatgacataattgaatgtaatca 8457969  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 93
Target Start/End: Original strand, 32843724 - 32843757
Alignment:
Q  60 taatatgataaaatgacataattgaatgtaatca 93  Q
    |||||||| |||||||||||||||||||||||||    
T  32843724 taatatgagaaaatgacataattgaatgtaatca 32843757  T

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