View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14244_high_3 (Length: 341)
Name: NF14244_high_3
Description: NF14244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14244_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 33375893 - 33375564
Alignment:
| Q |
1 |
tgatatgaaatgagaattagcattagtataaatgcatgtgcttgatttgtattcaataatcaattcaataatacacagtttatgcaatttcctttctttg |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33375893 |
tgatatcaaatgagaattagcattagtataaatgcatgtgcttgatttgtattcaataatcaattcaataatacacagtttatgcaatttcctttctttg |
33375794 |
T |
|
| Q |
101 |
tgtgtttatcaaaatgtgagtgtgagtctattatgatcatcctaattccatattaaaatcttaatcccaacacaactttaccatcaatagtctcaccccg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33375793 |
tgtgtttatcaaaatgtgagtgtgagtctattatgataatcctaattccatattaaaattttaatcccaacacaactttaccatcaatagtctcaccccg |
33375694 |
T |
|
| Q |
201 |
ttttattatgtacataatcaaccaaccatatatgcaaaaccatagctttgatggaatagattcattggtaaagcaagaaaaagaagggaagtgattaaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
33375693 |
ttttattatgtacataatcaaccaaccatatatgcaaaaccatagctttgatggaatagattcattggcaaagcaagaaaaagaagggaagtgattaaga |
33375594 |
T |
|
| Q |
301 |
agcaaatgtttttcaggaggaacatgatga |
330 |
Q |
| |
|
|||||||||| |||||||||||||| |||| |
|
|
| T |
33375593 |
agcaaatgttgttcaggaggaacattatga |
33375564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University