View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14244_high_6 (Length: 240)
Name: NF14244_high_6
Description: NF14244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14244_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 27258776 - 27258556
Alignment:
| Q |
1 |
cgttgagatctttgatgttaacttagtacatatatatagtagcttattccccttctttattactgttaaacaaactgaatattattgtaaagcttgagaa |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
27258776 |
cgtttagatctttgatgttaacttagtacatatatatagtagcttattccccttctttattactattaaacaaactgaatattattgtaaagctgataaa |
27258677 |
T |
|
| Q |
101 |
aacacaagtgaaggttgtcgtagcattcaaatgttccggacaaggttgatacaaatcaaatgtaaaatagtggaagtaaatacaactttgataattaatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
27258676 |
aacacaagtgaaggttgtcgtagcattcaaatgttccggacaaggttgatacaaatcaaatgtaaaatagtggaagt-aatacgactttgataattaatg |
27258578 |
T |
|
| Q |
201 |
gtcactaccttgccttccatat |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
27258577 |
gtcactaccttgccttccatat |
27258556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University