View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14244_low_10 (Length: 240)
Name: NF14244_low_10
Description: NF14244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14244_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 27258776 - 27258556
Alignment:
| Q |
1 |
cgttgagatctttgatgttaacttagtacatatatatagtagcttattccccttctttattactgttaaacaaactgaatattattgtaaagcttgagaa |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
27258776 |
cgtttagatctttgatgttaacttagtacatatatatagtagcttattccccttctttattactattaaacaaactgaatattattgtaaagctgataaa |
27258677 |
T |
|
| Q |
101 |
aacacaagtgaaggttgtcgtagcattcaaatgttccggacaaggttgatacaaatcaaatgtaaaatagtggaagtaaatacaactttgataattaatg |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
27258676 |
aacacaagtgaaggttgtcgtagcattcaaatgttccggacaaggttgatacaaatcaaatgtaaaatagtggaagt-aatacgactttgataattaatg |
27258578 |
T |
|
| Q |
201 |
gtcactaccttgccttccatat |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
27258577 |
gtcactaccttgccttccatat |
27258556 |
T |
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