View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14244_low_2 (Length: 529)
Name: NF14244_low_2
Description: NF14244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14244_low_2 |
 | |
|
| [»] scaffold1408 (1 HSPs) |
| | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold1408 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: scaffold1408
Description:
Target: scaffold1408; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 9 - 528
Target Start/End: Complemental strand, 758 - 227
Alignment:
| Q |
9 |
ggaagctttccaaacttgtatatttaaatttggagcattgcaagttgttggaatctttgtctcaacttccttttcctaccactattggg----------- |
97 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| | |||||||||| |
|
|
| T |
758 |
ggaagctttccagacttgtatatttaaatttggagcattgcaagttgttggaatcgttgcctcaacttccttttccaagcactattgggccggattatca |
659 |
T |
|
| Q |
98 |
----aacaacga---ttggtggattaaaggattgttcattttcaactgtccaagattgggtgagagggaacattgcagtagcatgacattttcatggatg |
190 |
Q |
| |
|
|||||||| || |||| |||||||||| |||||||||||||||||| |||||||||||||||| ||| |||||||| ||||||||||||||| |
|
|
| T |
658 |
tgagaacaacgaatattattggactaaaggattggtcattttcaactgtccaaaattgggtgagagggaatgttgtagtagcataacattttcatggatg |
559 |
T |
|
| Q |
191 |
acacaattcatttgggcataccaacaatcctaccctaactattttgatgggcttcaaattgtctctccaggaagtgaaatacccggttggatcaacaatc |
290 |
Q |
| |
|
| |||||||||| |||| |||||||||||||| | ||||| ||| |||||||||||| ||||||||||||||||||| | ||||||||||||| |
|
|
| T |
558 |
aaacaattcattcaggcaaaccaacaatcctacggtccgtatttgtatgagcttcaaattgttactccaggaagtgaaataccaagctggatcaacaatc |
459 |
T |
|
| Q |
291 |
agagcatgggtggttcgatacaaatagacgaatatcctattatgcatgacaataacaataatatcattggctttgtaggttgtgtattattttccacagc |
390 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||| |||| |||| ||||||||||| ||||||||||||||||||||| ||||| | |||||| || || |
|
|
| T |
458 |
agagcatgggtggttcaatactaatagacgaatctcctgttatacatgacaataagaataatatcattggctttgtattttgtgcagtattttgcatggc |
359 |
T |
|
| Q |
391 |
acctcaacctcaagatccaacattgatagattgttttccattgttggtttatatgaaaataggtagtaagaggaaccgtagacagcttccggtaattaac |
490 |
Q |
| |
|
||||||||||| |||| ||||||| ||| ||||||||| |||||||||||||| ||| | |||||||| ||||| || |||||||||| | | |
|
|
| T |
358 |
------acctcaagatcaaacaatgatagaatgtcttccattgtctgtttatatgaaaatgggtgatgagaggaactgtagaaagtttccggtaataatc |
265 |
T |
|
| Q |
491 |
gatagagatcttcttacgaccaaatcaagtcacctatg |
528 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||| |
|
|
| T |
264 |
gatagagatcttattccgaccaaatcaagtcacctatg |
227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 9 - 528
Target Start/End: Complemental strand, 6504 - 5973
Alignment:
| Q |
9 |
ggaagctttccaaacttgtatatttaaatttggagcattgcaagttgttggaatctttgtctcaacttccttttcctaccactattggg----------- |
97 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| | |||||||||| |
|
|
| T |
6504 |
ggaagctttccagacttgtatatttaaatttggagcattgcaagttgttggaatcgttgcctcaacttccttttccaagcactattgggccggattatca |
6405 |
T |
|
| Q |
98 |
----aacaacga---ttggtggattaaaggattgttcattttcaactgtccaagattgggtgagagggaacattgcagtagcatgacattttcatggatg |
190 |
Q |
| |
|
|||||||| || |||| |||||||||| |||||||||||||||||| |||||||||||||||| ||| |||||||| ||||||||||||||| |
|
|
| T |
6404 |
tgagaacaacgaatattattggactaaaggattggtcattttcaactgtccaaaattgggtgagagggaatgttgtagtagcataacattttcatggatg |
6305 |
T |
|
| Q |
191 |
acacaattcatttgggcataccaacaatcctaccctaactattttgatgggcttcaaattgtctctccaggaagtgaaatacccggttggatcaacaatc |
290 |
Q |
| |
|
| |||||||||| |||| |||||||||||||| | ||||| ||| |||||||||||| ||||||||||||||||||| | ||||||||||||| |
|
|
| T |
6304 |
aaacaattcattcaggcaaaccaacaatcctacggtccgtatttgtatgagcttcaaattgttactccaggaagtgaaataccaagctggatcaacaatc |
6205 |
T |
|
| Q |
291 |
agagcatgggtggttcgatacaaatagacgaatatcctattatgcatgacaataacaataatatcattggctttgtaggttgtgtattattttccacagc |
390 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||| |||| |||| ||||||||||| ||||||||||||||||||||| ||||| | |||||| || || |
|
|
| T |
6204 |
agagcatgggtggttcaatactaatagacgaatctcctgttatacatgacaataagaataatatcattggctttgtattttgtgcagtattttgcatggc |
6105 |
T |
|
| Q |
391 |
acctcaacctcaagatccaacattgatagattgttttccattgttggtttatatgaaaataggtagtaagaggaaccgtagacagcttccggtaattaac |
490 |
Q |
| |
|
||||||||||| |||| ||||||| ||| ||||||||| |||||||||||||| ||| | |||||||| ||||| || |||||||||| | | |
|
|
| T |
6104 |
------acctcaagatcaaacaatgatagaatgtcttccattgtctgtttatatgaaaatgggtgatgagaggaactgtagaaagtttccggtaataatc |
6011 |
T |
|
| Q |
491 |
gatagagatcttcttacgaccaaatcaagtcacctatg |
528 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||| |
|
|
| T |
6010 |
gatagagatcttattccgaccaaatcaagtcacctatg |
5973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 180; Significance: 6e-97; HSPs: 24)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 126 - 528
Target Start/End: Original strand, 28870198 - 28870594
Alignment:
| Q |
126 |
tcattttcaactgtccaagattgggtgagagggaacattgcagtagcatgacattttcatggatgacacaattcatttgggcataccaacaatcctaccc |
225 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||| ||| |||||||| ||||||||||||||| |||||||||| ||||||||| ||||||||||| |
|
|
| T |
28870198 |
tcattttcaactgtccaaatttaggtgagagggaacgttgttgtagcatggcattttcatggatgaaacaattcattcgggcataccgacaatcctacct |
28870297 |
T |
|
| Q |
226 |
taactattttgatgggcttcaaattgtctctccaggaagtgaaatacccggttggatcaacaatcagagcatgggtggttcgatacaaatagacgaatat |
325 |
Q |
| |
|
| |||||| |||| | || | ||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
28870298 |
tgtctatttggatgcgtttaatattgttactccaggaagtgaaataccaagttggattaacaatcagagcatgggtggttcaatacaaatagacgaatct |
28870397 |
T |
|
| Q |
326 |
cctattatgcatgacaataacaataatatcattggctttgtaggttgtgtattattttccacagcacctcaacctcaagatccaacattgatagattgtt |
425 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||||| ||||| | || || ||||||||||||||| ||||| | ||| |
|
|
| T |
28870398 |
cctattataaatgacaataacaataatatcattggctttgtatgttgtgtgttattcttcaaggc------gcctcaagatccaacaatgataaaatgtc |
28870491 |
T |
|
| Q |
426 |
ttccattgttggtttatatgaaaataggtagtaagaggaaccgtagacagcttccggtaattaacgatagagatcttcttacgaccaaatcaagtcacct |
525 |
Q |
| |
|
||||| |||| || ||||||||||| ||||||||||||||| || | | ||| ||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28870492 |
ttccactgttcgtctatatgaaaatgggtagtaagaggaactgtcaaaaactttcggtaattatcgatagagatcttattacgaccaaatcaagtcacct |
28870591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 9 - 386
Target Start/End: Complemental strand, 33262737 - 33262345
Alignment:
| Q |
9 |
ggaagctttccaaacttgtatatttaaatttggagcattgcaagttgttggaatctttgtctcaacttccttttcctaccactattggg----aacaacg |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||| |||||||| | || || |
|
|
| T |
33262737 |
ggaagctttccaaacttgtatatttaaatttggagcattgcaggttgttggaatctttgcctcaacttccttctcctacctctattgggcgggatcatcg |
33262638 |
T |
|
| Q |
105 |
-----------attggtggattaaaggattgttcattttcaactgtccaagattgggtgagagggaacattgcagtagcatgacattttcatggatgaca |
193 |
Q |
| |
|
|| || || || ||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
33262637 |
tgagaaggagtataagttgaatacaggattggtcattttcaactgtccaaaattgggtgagagggaacgttgcagtagcatgacattttcatggacgaca |
33262538 |
T |
|
| Q |
194 |
caattcatttgggcataccaacaatcctaccctaactattttgatgggcttcaaattgtctctccaggaagtgaaatacccggttggatcaacaatcaga |
293 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||| |||| | |||||||||| |||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
33262537 |
caattcattcaagcataccaacaatcctaccctacttatttggatgagtttcaaattgttagtccaggaaatgaaataccaagttggatcaacaatcaga |
33262438 |
T |
|
| Q |
294 |
gcatgggtggttcgatacaaatagacgaatatcctattatgcatgacaataacaataatatcattggctttgtaggttgtgtattattttcca |
386 |
Q |
| |
|
||||||||| ||| |||| | ||||| || ||||||||||||||| |||||||||||||||||||||||| || ||||||| ||||||||| |
|
|
| T |
33262437 |
gcatgggtgattcaataccagtagaccaaactcctattatgcatgataataacaataatatcattggctttctatgttgtgttgtattttcca |
33262345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 9 - 374
Target Start/End: Original strand, 33644437 - 33644817
Alignment:
| Q |
9 |
ggaagctttccaaacttgtatatttaaatttggagcattgcaagttgttggaatctttgtctcaacttccttttcctaccactattggg----------- |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
33644437 |
ggaagctttccaaacttgtatatttaaatttggaacactgcaagttgttggaatctttgcctcaacttccttcccctaccactattgggcgggaacgaga |
33644536 |
T |
|
| Q |
98 |
----aacaacgattggtggattaaaggattgttcattttcaactgtccaagattgggtgagagggaacattgcagtagcatgacattttcatggatgaca |
193 |
Q |
| |
|
|| ||||| |||||| ||||||| |||||||||||||| ||| ||||||||||||||||| |||||| |||||||||||||||||||||| | |
|
|
| T |
33644537 |
tgagaatgacgatgtctggatttcaggattggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgata |
33644636 |
T |
|
| Q |
194 |
caattcatttgggcataccaacaatcctaccctaactattttgatgggcttcaaattgtctctccaggaagtgaaatacccggttggatcaacaatcaga |
293 |
Q |
| |
|
||||||||| |||| ||| |||||||||||| | ||| |||||| || ||||||||| ||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
33644637 |
caattcattcaggcaaacctacaatcctacccaacctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaa |
33644736 |
T |
|
| Q |
294 |
gcatgggtggttcgatacaaatagacgaatatcctattatgcatgacaataacaataatatcattggctttgtaggttgtg |
374 |
Q |
| |
|
| ||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
33644737 |
gtgtgggttattcaatacaaatagacgaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtg |
33644817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 9 - 374
Target Start/End: Complemental strand, 33304595 - 33304215
Alignment:
| Q |
9 |
ggaagctttccaaacttgtatatttaaatttggagcattgcaagttgttggaatctttgtctcaacttccttttcctaccactatt------gggaacaa |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||| |||||||| |||| | |||||| |
|
|
| T |
33304595 |
ggaagctttccaaacttgtatatttaaatttgcagcattgcatgttgttggaatctttgcctcaacttccttctcctaccaatattattcgtgagaacaa |
33304496 |
T |
|
| Q |
103 |
cga---ttggtggat------taaaggattgttcattttcaactgtccaagattgggtgagagggaacattgcagtagcatgacattttcatggatgaca |
193 |
Q |
| |
|
| | || ||||| || |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
33304495 |
caaatatttctggatctggcctacaggattgttcattttcaactgtccaaaattgggtgagagggaacgttgcagtagcatgacattttcatggttgaca |
33304396 |
T |
|
| Q |
194 |
caattcatttgggcataccaacaatcctaccctaactattttgatgggcttcaaattgtctctccaggaagtgaaatacccggttggatcaacaatcaga |
293 |
Q |
| |
|
||||||||| |||| || |||||||||||||| | |||||| || |||||||||| ||||||||| ||||||||| ||||||||||||| ||| |
|
|
| T |
33304395 |
caattcattgaggcaaactcacaatcctaccctacgtcctttgattggattcaaattgttactccaggaaatgaaataccaatttggatcaacaataaga |
33304296 |
T |
|
| Q |
294 |
gcatgggtggttcgatacaaatagacgaatatcctattatgcatgacaataacaataatatcattggctttgtaggttgtg |
374 |
Q |
| |
|
|| |||||| ||| |||||||||||| || ||||||||||||||||||||||||| |||||||||||||| || |||||| |
|
|
| T |
33304295 |
gcgtgggtgattcaatacaaatagaccgatctcctattatgcatgacaataacaattatatcattggctttctatgttgtg |
33304215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 9 - 385
Target Start/End: Original strand, 31562718 - 31563112
Alignment:
| Q |
9 |
ggaagctttccaaacttgtatatttaaatttggagcattgcaagttgttggaatctttgtctcaacttccttttcctaccactattggg----------- |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
31562718 |
ggaagctttccaaacttgtatatttaaatttggagcattgcgagttgttggaatctttgcctcaacttccttctcctaccactattgggcgggatcgtcg |
31562817 |
T |
|
| Q |
98 |
-aacaacgattggtggattaaaggattgttcattttcaactgtccaagattgg------gtgagagggaacattgcagtagcatgacattttcatggatg |
190 |
Q |
| |
|
| ||| | ||||||| || ||||||| ||||||| |||||||| | ||||| |||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
31562818 |
tgagaacaaatggtggactacaggattggtcatttttaactgtccgaaattggctgagagtgagagggagcattgcaggagcatgacattttcatggatg |
31562917 |
T |
|
| Q |
191 |
acacaattcatttgggcataccaacaatcctaccctaactattttgatgggcttcaaattgtctctccaggaagtgaaatacccggttggatcaacaatc |
290 |
Q |
| |
|
||||||||||| |||||| | ||| ||||||||| |||||| |||| | |||| ||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
31562918 |
gcacaattcattaaggcatatccacactcctaccctgcctatttggatgagtttcatattgttgttccaggaagtgaaataccgaattggatcaacaatc |
31563017 |
T |
|
| Q |
291 |
agagcatgggtggttcgatacaaatagacgaatatcctattatgcatgacaataacaataatatcattggctttgtaggttgtgtattattttcc |
385 |
Q |
| |
|
| |||||||||| ||| |||| |||||| | |||| |||||||||||||| |||| ||||||||||||||||| |||||| | |||||||| |
|
|
| T |
31563018 |
atagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatcaatgatatcattggctttgtatgttgtgcagtattttcc |
31563112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 108 - 374
Target Start/End: Complemental strand, 33388151 - 33387885
Alignment:
| Q |
108 |
ggtggattaaaggattgttcattttcaactgtccaagattgggtgagagggaacattgcagtagcatgacattttcatggatgacacaattcatttgggc |
207 |
Q |
| |
|
||||||| | ||||||| || ||||||||||||||| | ||||||| ||||| |||||||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
33388151 |
ggtggatcacaggattgatcgttttcaactgtccaaaactgggtgatagggagtgttgcagtagcatgacattttcatggatgacacaatttattaaggc |
33388052 |
T |
|
| Q |
208 |
ataccaacaatcctaccctaactattttgatgggcttcaaattgtctctccaggaagtgaaatacccggttggatcaacaatcagagcatgggtggttcg |
307 |
Q |
| |
|
| ||| |||| |||||||| |||||||||| | |||||||||| || |||||||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
33388051 |
aaaccgacaaacctaccctgcctattttgatacgattcaaattgttactacaggaagtgaaataccgagttggatcaacaatcagagcatgggtgattca |
33387952 |
T |
|
| Q |
308 |
atacaaatagacgaatatcctattatgcatgacaataacaataatatcattggctttgtaggttgtg |
374 |
Q |
| |
|
|||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
33387951 |
atactaatagacaaattgcctattatgcatgacaataacaataatatcattggctttctatgttgtg |
33387885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 118 - 528
Target Start/End: Complemental strand, 33409959 - 33409561
Alignment:
| Q |
118 |
aggattgttcattttcaactgtccaagattgggtgagagggaacattgcagtagcatgacattttcatggatgacacaattcatttgggcataccaacaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||| ||| ||||||||||| |||| |||||| |||| |||||||| |
|
|
| T |
33409959 |
aggattgttcattttcaactgtccaaaattggttgagagggaacgttgcagtagcatcacaatttcatggatggcacatttcattcaggcaaaccaacaa |
33409860 |
T |
|
| Q |
218 |
tcctaccctaactattttgatgggcttcaaattgtctctccaggaagtgaaatacccggttggatcaacaatcagagcatgggtggttcgatacaaatag |
317 |
Q |
| |
|
|| ||| | || | |||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||| ||| ||| ||| | |
|
|
| T |
33409859 |
ccc------aacaaattgtcggcgcttcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcagagcgtgggtgcttcaatatcaattg |
33409766 |
T |
|
| Q |
318 |
acgaatatcctattatgcatgacaataacaataatatcattggctttgtaggttgtgtattattttccacagcacctcaacctcaagatccaacattgat |
417 |
Q |
| |
|
| |||| |||| |||| ||||||||||||||||||| |||||||||||| ||||||||||| |||||| || |||||||||| ||||| |||| |
|
|
| T |
33409765 |
atgaatctcctgttataaatgacaataacaataatattattggctttgtaagttgtgtattaatttccatggc------acctcaagatacaacaatgat |
33409672 |
T |
|
| Q |
418 |
agattgttttccattgttggtttatatgaaaataggtagtaagaggaaccgtagacagcttccggtaattaacgatagagatcttcttacgaccaaatca |
517 |
Q |
| |
|
||||||||||| | | | ||||||||||| ||| |||| | ||||||||| ||||||| || |||| || ||||||||| |||| ||||||||| |
|
|
| T |
33409671 |
gcattgttttccactctccatctatatgaaaatgggtgctaagcgaaaccgtagaaagcttccagtgattatcgtaagagatcttattacaaccaaatca |
33409572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 121 - 374
Target Start/End: Complemental strand, 33285581 - 33285325
Alignment:
| Q |
121 |
attgttcattttcaactgtccaagattgggtgagagggaacattgcagtagcatgacattttcatggatgacacaattcatttgggcataccaacaatcc |
220 |
Q |
| |
|
|||| |||||||||||||||||| ||| ||||| ||||||| ||||||||||||| ||||||||||||||| ||||||||| |||||||||||| | |
|
|
| T |
33285581 |
attggtcattttcaactgtccaaaattaggtgaaagggaacgttgcagtagcatggcattttcatggatgatacaattcatccaggcataccaacacttt |
33285482 |
T |
|
| Q |
221 |
taccctaa---ctattttgatgggcttcaaattgtctctccaggaagtgaaatacccggttggatcaacaatcagagcatgggtggttcgatacaaatag |
317 |
Q |
| |
|
|||||| || ||||| ||| |||| ||||| ||||||||||||||||||| ||||||| || ||||||||| ||||| |||| |||| ||||| |
|
|
| T |
33285481 |
taccctgcgtccttatttgaagggattcatattgttactccaggaagtgaaataccaagttggattaataatcagagcgtgggtagttcaataccaatag |
33285382 |
T |
|
| Q |
318 |
acgaatatcctattatgcatgacaataacaataatatcattggctttgtaggttgtg |
374 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33285381 |
acagatctcctattatgcatgacaataacaataatatcattggctttgtatgttgtg |
33285325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 118 - 395
Target Start/End: Complemental strand, 9166739 - 9166471
Alignment:
| Q |
118 |
aggattgttcattttcaactgtccaagattgggtgagagggaacattgcagtagcatgacattttcatggatgacacaattcatttgggcataccaacaa |
217 |
Q |
| |
|
||||||| ||||||||||||||||| |||| |||| | ||||||||||||||||||||||||||||||||||| ||||| ||| |||| ||| || | |
|
|
| T |
9166739 |
aggattggtcattttcaactgtccagaattgagtgataaggaacattgcagtagcatgacattttcatggatgatgcaatttattcaggcaaacccacca |
9166640 |
T |
|
| Q |
218 |
tcctaccctaactattttgatgggcttcaaattgtctctccaggaagtgaaatacccggttggatcaacaatcagagcatgggtggttcgatacaaatag |
317 |
Q |
| |
|
||| || |||||| || |||||||||| | ||||||| ||||||||| ||||||||||||||| |||| ||| ||||||||||| ||||| |
|
|
| T |
9166639 |
tcccac---------tttgataggattcaaattgttacgccaggaattgaaataccaagttggatcaacaatcggagcgtggatggttcgataccaatag |
9166549 |
T |
|
| Q |
318 |
acgaatatcctattatgcatgacaataacaataatatcattggctttgtaggttgtgtattattttccacagcacctc |
395 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||||||||||||| |||||| | |||| |||| ||||||| |
|
|
| T |
9166548 |
acctaactcctattatgcatgacaataacaataatatcattggctttgtatgttgtgcagtattctccatggcacctc |
9166471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 9 - 202
Target Start/End: Complemental strand, 33399165 - 33398957
Alignment:
| Q |
9 |
ggaagctttccaaacttgtatatttaaatttggagcattgcaagttgttggaatctttgtctcaacttccttttcctaccactattggg----------- |
97 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
33399165 |
ggaagctttccgaacttgtatatttaaatttggaacactgcaagttgttggaatctttgcctcaacttccttcccctaccactattgggcgggaacgaga |
33399066 |
T |
|
| Q |
98 |
----aacaacgattggtggattaaaggattgttcattttcaactgtccaagattgggtgagagggaacattgcagtagcatgacattttcatggatgaca |
193 |
Q |
| |
|
|| ||||| |||||| ||||||| |||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
33399065 |
tgagaatgacgatgactggatttcaggattggtcattttcaactgttcaaaattgggtgagagggaacgttgcagtagcatgacattttcatggatgata |
33398966 |
T |
|
| Q |
194 |
caattcatt |
202 |
Q |
| |
|
||||||||| |
|
|
| T |
33398965 |
caattcatt |
33398957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 33358978 - 33358890
Alignment:
| Q |
9 |
ggaagctttccaaacttgtatatttaaatttggagcattgcaagttgttggaatctttgtctcaacttccttttcctaccactattggg |
97 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33358978 |
ggaagctttctaaacttgtatatttaaatttggaacattgcaagttgttggaatctttgcctcaacttccttttcctaccactattggg |
33358890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 33285727 - 33285641
Alignment:
| Q |
11 |
aagctttccaaacttgtatatttaaatttggagcattgcaagttgttggaatctttgtctcaacttccttttcctaccactattggg |
97 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
33285727 |
aagctgtccaaacttgtatatttaaatttggagcattgcaagttgttggaatctttgcctcaacttccttttcctaccaatattggg |
33285641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 118 - 374
Target Start/End: Complemental strand, 33057553 - 33057309
Alignment:
| Q |
118 |
aggattgttcattttcaactgtccaagattgggtgagagggaacattgcagtagcatgacattttcatggatgacacaattcatttgggcataccaacaa |
217 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||| |||||||| |||||||||| |||| ||| || |
|
|
| T |
33057553 |
aggattgctcattttcaactgtccaaaattgggtgagagggaacattgcaggagcatgacacttttatggatgaaacaattcattaaggcaaacccacgt |
33057454 |
T |
|
| Q |
218 |
tcctaccctaactattttgatgggcttcaaattgtctctccaggaagtgaaatacccggttggatcaacaatcagagcatgggtggttcgatacaaatag |
317 |
Q |
| |
|
|| || || ||| | ||||||| || |||||||||||||||||| ||||||||||||||||||| |||||| ||| ||| ||||| |
|
|
| T |
33057453 |
tc---------ctcttctga---gattcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaatagcaatag |
33057366 |
T |
|
| Q |
318 |
acgaatatcctattatgcatgacaataacaataatatcattggctttgtaggttgtg |
374 |
Q |
| |
|
|| || |||||||| |||||||||| |||||||||||||||| ||||| |||||| |
|
|
| T |
33057365 |
accgatctcctattaggcatgacaatgacaataatatcattggtattgtatgttgtg |
33057309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 33057680 - 33057600
Alignment:
| Q |
9 |
ggaagctttccaaacttgtatatttaaatttggagcattgcaagttgttggaatctttgtctcaacttccttttcctacca |
89 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33057680 |
ggaagctatccaaacttgtatatttaaatttggagcattgcaaattgttggaatctttgcctcaacttccttttcctacca |
33057600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 33410116 - 33410033
Alignment:
| Q |
9 |
ggaagctttccaaacttgtatatttaaatttggagcattgcaagttgttggaatctttgtctcaacttccttttcctaccacta |
92 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33410116 |
ggaagctttccaaacttgaatatttagatttgcagcattgcaagttgttggaatctttgcctcaacttccttttcctaccacta |
33410033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 28870066 - 28870150
Alignment:
| Q |
9 |
ggaagctttccaaacttgtatatttaaatttggagcattgcaagttgttggaatctttgtctcaacttccttttcctaccactat |
93 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||| |||| |
|
|
| T |
28870066 |
ggaagctttccaaacttgaatatttaaatttggagcattgcaagttgtttgaatctttgcctcaacttccttctcctacccctat |
28870150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 33388271 - 33388183
Alignment:
| Q |
9 |
ggaagctttccaaacttgtatatttaaatttggagcattgcaagttgttggaatctttgtctcaacttccttttcctaccactattggg |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||| || ||||||||||||| |
|
|
| T |
33388271 |
ggaagctttccaaacttgtatatttaaatttggagcattgcaagttcttgaaatcttttcctcaacttccttctcttaccactattggg |
33388183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 112 - 318
Target Start/End: Complemental strand, 33271785 - 33271582
Alignment:
| Q |
112 |
gattaaaggattgttcattttcaactgtccaagattgg------gtgagagggaacattgcagtagcatgacattttcatggatgacacaattcatttgg |
205 |
Q |
| |
|
||||| ||||||| |||||||||||||||||| ||||| |||||||||||| |||||||||| |||||||||||||||||| |||||||||| | |
|
|
| T |
33271785 |
gattacaggattggtcattttcaactgtccaaaattggctgactgtgagagggaacgttgcagtagcttgacattttcatggatgatacaattcattatg |
33271686 |
T |
|
| Q |
206 |
gcataccaacaatcctaccctaactattttgatgggcttcaaattgtctctccaggaagtgaaatacccggttggatcaacaatcagagcatgggtggtt |
305 |
Q |
| |
|
||| ||| ||||| || ||| ||| | |||| ||| | ||||||||||||||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
33271685 |
gcaaacccgcaatctta---------tttgaatgagtttcatattataactccaggaagtgaaataccaagttggatcaacaatcagagcatgggtgatt |
33271595 |
T |
|
| Q |
306 |
cgatacaaataga |
318 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
33271594 |
cgataccaataga |
33271582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 9166863 - 9166779
Alignment:
| Q |
9 |
ggaagctttccaaacttgtatatttaaatttggagcattgcaagttgttggaatctttgtctcaacttccttttcctaccactat |
93 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||| |||||||||||||| ||| |||||| |
|
|
| T |
9166863 |
ggaagctttccaaacttgtatatttaaatttggagcattgcaggttgttggagtttttgcctcaacttcctttttctaacactat |
9166779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 33271936 - 33271865
Alignment:
| Q |
9 |
ggaagctttccaaacttgtatatttaaatttggagcattgcaagttgttggaatctttgtctcaacttcctt |
80 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
33271936 |
ggaagctttccaaacttgtatatttaaatttggaacattgcaagttgttggaatctttgcctcgacttcctt |
33271865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 152 - 270
Target Start/End: Complemental strand, 33358849 - 33358727
Alignment:
| Q |
152 |
gagagggaacattgcagtagcatgacattttcatggatgacacaattcatttg----ggcataccaacaatcctaccctaactattttgatgggcttcaa |
247 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||| |||||||||| |||| ||| || |||||||||| |||||||| || | ||||| |
|
|
| T |
33358849 |
gagagggaacgttgcagtagcatgacactttcatggatgaaacaattcattcattctggcaaacccaccatcctaccctgactattttcatagcattcaa |
33358750 |
T |
|
| Q |
248 |
attgtctctccaggaagtgaaat |
270 |
Q |
| |
|
|| || |||||||||||||||| |
|
|
| T |
33358749 |
atagttactccaggaagtgaaat |
33358727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 256 - 349
Target Start/End: Complemental strand, 33398921 - 33398828
Alignment:
| Q |
256 |
tccaggaagtgaaatacccggttggatcaacaatcagagcatgggtggttcgatacaaatagacgaatatcctattatgcatgacaataacaat |
349 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| | |||||| ||| |||||||||||| || |||| ||||||||| ||||||||| |
|
|
| T |
33398921 |
tccaggaagtgaaataccaagttggatcaacaatcagtgtgtgggtgattcaatacaaatagacctatctcctgctatgcatgataataacaat |
33398828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 386
Target Start/End: Complemental strand, 33358713 - 33358652
Alignment:
| Q |
325 |
tcctattatgcatgacaataacaataatatcattggctttgtaggttgtgtattattttcca |
386 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||| |||||| |||||| | ||||||||| |
|
|
| T |
33358713 |
tcctattaggcatgacaataacaataatgtcattggttttgtatgttgtgcagtattttcca |
33358652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 492 - 528
Target Start/End: Complemental strand, 33398715 - 33398679
Alignment:
| Q |
492 |
atagagatcttcttacgaccaaatcaagtcacctatg |
528 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
33398715 |
atagagatcttgttacgaccgaatcaagtcacctatg |
33398679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 109 - 396
Target Start/End: Original strand, 31472559 - 31472849
Alignment:
| Q |
109 |
gtggattaaaggattgttcattttcaactgtccaagattgggtgagagggaacattg---cagtagcatgacattttcatggatgacacaattcatttgg |
205 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||| | |||||||||||||||||||| || || |||||||||||||||||||| |||| ||||| | |
|
|
| T |
31472559 |
gtggcttacaggattgctcattttcaactgtcctaatttgggtgagagggaacattgttgcactaacatgacattttcatggatgatacaactcattcag |
31472658 |
T |
|
| Q |
206 |
gcataccaacaatcctaccctaactattttgatgggcttcaaattgtctctccaggaagtgaaatacccggttggatcaacaatcagagcatgggtggtt |
305 |
Q |
| |
|
||| | | |||||||| |||| ||| || |||| |||| ||||| ||||||||||||||||||| ||||| |||||||||||| || ||||| || |
|
|
| T |
31472659 |
gcaaatccacaatccttccctgactgttatgatataattcagattgttactccaggaagtgaaataccaagttggttcaacaatcagaacaagggtgatt |
31472758 |
T |
|
| Q |
306 |
cgatacaaatagacgaatatcctattatgcatgacaataacaataatatcattggctttgtaggttgtgtattattttccacagcacctca |
396 |
Q |
| |
|
|||||| | ||||| || ||| |||||||||||||||||||||||||||||||| | | || |||||||| ||||||| | ||||||||| |
|
|
| T |
31472759 |
cgatacgattagactcatctcccattatgcatgacaataacaataatatcattggttgtatatgttgtgtagtattttctatagcacctca |
31472849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 118 - 384
Target Start/End: Original strand, 31479029 - 31479295
Alignment:
| Q |
118 |
aggattgttcattttcaactgtccaagattgggtgagagggaacattgcagtagcatgacattttcatggatgacacaattcatttgggcataccaacaa |
217 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||| | ||||| ||| ||||||||||||||||||||||||| |||||||||| |||| ||| |||| |
|
|
| T |
31479029 |
aggattgttcattttcaactgtcctaaattgggtgaaacggaacgttggagtagcatgacattttcatggatgatacaattcattcaggcaaaccgacaa |
31479128 |
T |
|
| Q |
218 |
tcctaccctaactattttgatgggcttcaaattgtctctccaggaagtgaaatacccggttggatcaacaatcagagcatgggtggttcgatacaaatag |
317 |
Q |
| |
|
| || || | ||| | |||| || |||||||||| ||||||| |||||||| || ||||| ||||||||||||||| |||| || |||| ||||| |
|
|
| T |
31479129 |
ttctcccatgactcctctgatagggttcaaattgttactccaggtagtgaaatgccaagttggttcaacaatcagagcaagggtaatttaatacgaatag |
31479228 |
T |
|
| Q |
318 |
acgaatatcctattatgcatgacaataacaataatatcattggctttgtaggttgtgtattattttc |
384 |
Q |
| |
|
| | ||| |||||||| |||||||||||||||||| |||||| |||| |||||||| ||||||| |
|
|
| T |
31479229 |
attcttctccgattatgcacgacaataacaataatatcgttggctgtgtatgttgtgtagtattttc |
31479295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 12 - 198
Target Start/End: Complemental strand, 31157325 - 31157133
Alignment:
| Q |
12 |
agctttccaaacttgtatatttaaatttggagcattgcaagttgttggaatctttgtctcaacttccttttcctaccactattggg-----aacaac-ga |
105 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| | |||||||||||| ||||||||||||||||||| || | | | ||||| | |
|
|
| T |
31157325 |
agctttccaaacttgtatatttaaacttggagcattgcaagcttttggaatctttgcctcaacttccttttcctactgctttcgagcatatgacaacata |
31157226 |
T |
|
| Q |
106 |
ttggtggattaaaggattgttcattttcaactgtccaagattgggtgagagggaacattgcagtagcatgacattttcatggatgacacaatt |
198 |
Q |
| |
|
| | ||| ||||||| |||||||||||||||| | |||||||||||| ||| |||||| ||||||| ||||||||||||||| |||||| |
|
|
| T |
31157225 |
taagaggacagtaggattggtcattttcaactgtcctaaattgggtgagagtgaagattgcaatagcatggcattttcatggatgatacaatt |
31157133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 255 - 384
Target Start/End: Original strand, 31499213 - 31499342
Alignment:
| Q |
255 |
ctccaggaagtgaaatacccggttggatcaacaatcagagcatgggtggttcgatacaaatagacgaatatcctattatgcatgacaataacaataatat |
354 |
Q |
| |
|
||||||||||||||||| | ||||| | || |||||||||| ||||| ||| |||| ||||||| || ||| ||||| |||||||||||||||||||| |
|
|
| T |
31499213 |
ctccaggaagtgaaatatcaagttggtttaagaatcagagcaagggtgattcaatacgaatagactcatctcccattatccatgacaataacaataatat |
31499312 |
T |
|
| Q |
355 |
cattggctttgtaggttgtgtattattttc |
384 |
Q |
| |
|
||||||||||||| |||||| | ||||||| |
|
|
| T |
31499313 |
cattggctttgtatgttgtgcagtattttc |
31499342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 31498950 - 31499020
Alignment:
| Q |
14 |
ctttccaaacttgtatatttaaatttggagcattgcaagttgttggaatctttgtctcaacttccttttcc |
84 |
Q |
| |
|
|||||||||||||||| |||||| || || |||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
31498950 |
ctttccaaacttgtatgtttaaacttagaacattgcaaattgttggaatctttgcctcaacttccttttcc |
31499020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 128 - 386
Target Start/End: Original strand, 31504224 - 31504476
Alignment:
| Q |
128 |
attttcaactgtccaagattgggtgagagggaacattgcagtagcatgacattttcatggatgacacaattcatttgggcataccaacaatcctacccta |
227 |
Q |
| |
|
|||||||||||||| | ||||| |||||||||| | || ||| ||||||||||||||||||| |||||||||| |||| ||| |||||||| | |
|
|
| T |
31504224 |
attttcaactgtcctaaattggatgagagggaatgctacattagaatgacattttcatggatgatacaattcattaaggcaaacccacaatcctcatccg |
31504323 |
T |
|
| Q |
228 |
actattttgatgggcttcaaattgtctctccaggaagtgaaatacccggttggatcaacaatcagagcatgggtggttcgatacaaatagacgaatatcc |
327 |
Q |
| |
|
|||| ||| ||| | ||| ||| || |||| |||| ||||||||| ||||| |||||||| |||||| |||| | || |||||||||||| | |
|
|
| T |
31504324 |
actactttcatgtgattc-aatcgttactcctggaaatgaaataccaagttggttcaacaattagagcaagggtcgctccatacaaatagac-----tgg |
31504417 |
T |
|
| Q |
328 |
tattatgcatgacaataacaataatatcattggctttgtaggttgtgtattattttcca |
386 |
Q |
| |
|
| ||||||||||| ||| |||||||||||||| | |||| |||||||| ||||||||| |
|
|
| T |
31504418 |
tcttatgcatgactttaaaaataatatcattggttgtgtatgttgtgtagtattttcca |
31504476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 126 - 221
Target Start/End: Complemental strand, 31148267 - 31148172
Alignment:
| Q |
126 |
tcattttcaactgtccaagattgggtgagagggaacattgcagtagcatgacattttcatggatgacacaattcatttgggcataccaacaatcct |
221 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||| ||| | |||||||| |||||||||||||| |||| ||||| |||| ||| |||||||| |
|
|
| T |
31148267 |
tcattttcaactgtcctaaattgggtgagagggaatgttggaatagcatgatattttcatggatgatacaactcattcgggcgaacccacaatcct |
31148172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 31504078 - 31504133
Alignment:
| Q |
12 |
agctttccaaacttgtatatttaaatttggagcattgcaagttgttggaatctttg |
67 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
31504078 |
agctttccaaacttgtatatttaaacttggagcattgcaaactgttggaatctttg |
31504133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 31148414 - 31148336
Alignment:
| Q |
9 |
ggaagctttccaaacttgtatatttaaatttggagcattgcaagttgttggaatctttgtctcaacttccttttcctac |
87 |
Q |
| |
|
||||||| |||| ||||| ||||||||| ||| ||||||| ||||||||| |||| ||| |||||||||||||| |||| |
|
|
| T |
31148414 |
ggaagctatccagacttgcatatttaaacttgcagcattgtaagttgttgaaatcgttgcctcaacttccttttgctac |
31148336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 31478893 - 31478968
Alignment:
| Q |
12 |
agctttccaaacttgtatatttaaatttggagcattgcaagttgttggaatctttgtctcaacttccttttcctac |
87 |
Q |
| |
|
||||||| |||||||||||||||| || |||||||||||| ||||| |||||||| || |||||||| |||||| |
|
|
| T |
31478893 |
agctttcaaaacttgtatatttaagcttagagcattgcaagctgttgaaatctttgcctgtacttccttctcctac |
31478968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 296
Target Start/End: Complemental strand, 31148159 - 31148106
Alignment:
| Q |
243 |
ttcaaattgtctctccaggaagtgaaatacccggttggatcaacaatcagagca |
296 |
Q |
| |
|
|||||||||| |||| |||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
31148159 |
ttcaaattgttactccgggaagtgaaataccaagttggttcaacaatcagagca |
31148106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 118 - 198
Target Start/End: Complemental strand, 31526382 - 31526302
Alignment:
| Q |
118 |
aggattgttcattttcaactgtccaagattgggtgagagggaacattgcagtagcatgacattttcatggatgacacaatt |
198 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||| |||| | |||||| | || ||||||||||||||| |||||| |
|
|
| T |
31526382 |
aggattgtgtattttcaactgtcctgaattgggtgagatggaaaagtgcagtgacttggcattttcatggatgatacaatt |
31526302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 9 - 396
Target Start/End: Original strand, 17440777 - 17441161
Alignment:
| Q |
9 |
ggaagctttccaaacttgtatatttaaatttggagcattgcaagttgttggaatctttgtctcaacttccttttcctaccactattggg-aacaacgatt |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||| ||| ||||| | |
|
|
| T |
17440777 |
ggaagctttcgaaacttgtatatttaaatttgcagcattgcaagttgttggaatctttgcctcaacttccttttcctaccgctatcgggcgggaacgagt |
17440876 |
T |
|
| Q |
108 |
----ggtggat----------taaaggattgttcattttcaactgtccaagattgggtgagagggaacattgcagtagcatgacattttcatggatgaca |
193 |
Q |
| |
|
|| |||| || |||||||||||| ||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
17440877 |
tgagggcggatattaccggcctacaggattgttcatcttcaactgtccaaaattgggtgagagggaatgttacagtagcatgacattttcatggatgatg |
17440976 |
T |
|
| Q |
194 |
caattcatttgggcataccaacaatcctaccctaactattttgatgggcttcaaattgtctctccaggaagtgaaatacccggttggatcaacaatcaga |
293 |
Q |
| |
|
||||||||| |||| ||||| |||||| || || |||| ||||| ||||||||| |||||||| |||||||||||||| ||| |
|
|
| T |
17440977 |
caattcattaaggca------------aaccctttctatttgaataggattcatattgttagtccaggaagcgaaataccaagttggatcaacaataaga |
17441064 |
T |
|
| Q |
294 |
gcatgggtggttcgatacaaatagacgaatatcctattatgcatgacaataacaataatatcattggctttgtaggttgtgtattattttccacagcacc |
393 |
Q |
| |
|
|| |||||| ||| ||| ||||||| ||| |||||||| ||||| |||||||||||||||| |||||| |||||| | ||||||||| ||||| |
|
|
| T |
17441065 |
gcgtgggtgattcaataagaatagaccaatctcctattaagcatg------acaataatatcattggttttgtatgttgtgcagtattttccatggcacc |
17441158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 6785287 - 6785342
Alignment:
| Q |
12 |
agctttccaaacttgtatatttaaatttggagcattgcaagttgttggaatctttg |
67 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| || |||||||||||| ||| |||| |
|
|
| T |
6785287 |
agctttccaaactcgtatatttaaacttggatcactgcaagttgttgaaatatttg |
6785342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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