View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14244_low_5 (Length: 431)
Name: NF14244_low_5
Description: NF14244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14244_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 6 - 417
Target Start/End: Original strand, 43030607 - 43031018
Alignment:
| Q |
6 |
gtttcaattcacttgtaggtcatttgccagatacaatatcatgtttgcaagatattgaagttcttaatttggcacataacactctttctggtgatatatc |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43030607 |
gtttcaattcacttgtaggtcatttgccagatacaatatcatgtttgcaagatattgaagttcttaatttggcacataacaatctttctggtgatatatc |
43030706 |
T |
|
| Q |
106 |
tgatgtgatatgttctttgagaagcttgttgcatctaactgttacttctaatttcttttctgggtttagtcaagaatgttcacggctttacaatgttggt |
205 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
43030707 |
tgatgtgatatgttcattgagaagcttgttgaatctaactgttacttctaatttcttttctgggtttagtcaagaatgttcaaggcttttcaatgttggt |
43030806 |
T |
|
| Q |
206 |
tttgatttttcagataactgcattcctggtaggaatatgcagaaacctcaacctgagtgttcagtgatccctggtggtaatttgaattgtcttagaattc |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43030807 |
tttgatttttcagataactgcattcctggtaggaatatgcagaaacctcaacctgagtgttcagtgatccctggtggtaatttgaattgtcttagaattc |
43030906 |
T |
|
| Q |
306 |
ctaccccaaaacctcttatttgtggtactttggctgcaagtacttctaagcacacaaatattccttcatcatctccatgatgatagctactgttttattt |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43030907 |
ctaccccaaaacctcttatttgtggtactttggctgcaagtacttctaagtacacaaatattccttcatcatctccatgatgatagctactgttttattt |
43031006 |
T |
|
| Q |
406 |
agtggtagtagt |
417 |
Q |
| |
|
|||||||||||| |
|
|
| T |
43031007 |
agtggtagtagt |
43031018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 6 - 348
Target Start/End: Complemental strand, 34201122 - 34200774
Alignment:
| Q |
6 |
gtttcaattcacttgtaggtcatttgccagatacaatatcatgtttgcaagatattgaagttcttaatttggcacataacactctttctggtgatatatc |
105 |
Q |
| |
|
||||||||||| | | |||||||| || |||||| |||||||||| || |||| ||||| ||||| ||||| ||||| |||||||| || |||| |
|
|
| T |
34201122 |
gtttcaattcattgatgggtcatttacctgatacattatcatgtttacagaatatagaagtgcttaacttggctcataatcagctttctggagagttatc |
34201023 |
T |
|
| Q |
106 |
tgatgtgatatgttctttgagaagcttgttgcatctaactgttacttctaatttcttttctgggtttagtcaagaatgttcacggct-----ttac-aat |
199 |
Q |
| |
|
||| | || ||||||||||| || ||| || |||||||| ||| ||||||||||||||||||||||||| ||||||| ||| ||| ||| |
|
|
| T |
34201022 |
agatataatctgttctttgaggagtttggctaatttaactgttgcttataatttcttttctgggtttagtcaacaatgttctaagctgttttttaggaat |
34200923 |
T |
|
| Q |
200 |
gttggttttgatttttcagataactgcattcctggtaggaatatgcagaaacctcaacctgagtgttcagtgatccctggtggtaatttgaattgtctta |
299 |
Q |
| |
|
|||||||||||||||||| ||| || |||||||| ||||| ||||| | |||||||||||||||||| ||||||| ||||||| || | |||||| | |
|
|
| T |
34200922 |
gttggttttgatttttcacttaattgtattcctgggaggaacatgcaaagacctcaacctgagtgttctatgatcccaggtggtagcttaagttgtctca |
34200823 |
T |
|
| Q |
300 |
gaattcctaccccaaaacctcttatttgtggtactttggctgcaagtac |
348 |
Q |
| |
|
||||||| || |||||||||||| |||||||| || || ||| |||||| |
|
|
| T |
34200822 |
gaattccaacaccaaaacctcttgtttgtggttctatgtctgtaagtac |
34200774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University