View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14244_low_6 (Length: 408)
Name: NF14244_low_6
Description: NF14244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14244_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 15 - 389
Target Start/End: Complemental strand, 5410804 - 5410430
Alignment:
| Q |
15 |
caaaggatccgtttttgaggacgacaacgattattgtggttccaattattgaatactttgaaacacgtttctctcttcaaagaatttatccaacaatcat |
114 |
Q |
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| T |
5410804 |
caaaggatccgtttttgaggacgacaacgattgttgtggttccaattattgaatactttgaaacacgtttctctcttcaaagaatttatccaacaatcat |
5410705 |
T |
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| Q |
115 |
aaaaattagcgacgtaaataaatttgcaagtgaagtaaaaattagcgatacaagatacaaatgtacttatatgaccaaatttggttgattattgagcaaa |
214 |
Q |
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| T |
5410704 |
aaaaattagcgacgtaaataaatttgcaagtgaagtaaaaattagcgatacaagatacaaatgtacttatatgaccaaatttggttgattattgagcaaa |
5410605 |
T |
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| Q |
215 |
ttattcacaatttttcaaagatagcttagacctcactgaaaattaaattaggcaatattcataaaattaaaaaagaggaagataggcattcagatagtac |
314 |
Q |
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| T |
5410604 |
ttattcacaatttttcaaagatagcttagacctcacttaaaattaaattaggcaatattcataaaattaaaaaagaggaagataggcactcagatagtac |
5410505 |
T |
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| Q |
315 |
ataaaacacattgttcacttgcagaaattatggacgaaacttgcaagcagttttgagctcgtttgcaggcttgtc |
389 |
Q |
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| T |
5410504 |
ataaaacacattgttcacttgcagaaattatggacgaaacttgcaagcagttttgagctcgtttgcaggcttgtc |
5410430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 37424741 - 37424693
Alignment:
| Q |
47 |
attgtggttccaattattgaatactttgaaacacgtttctctcttcaaa |
95 |
Q |
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| T |
37424741 |
attgtggttccgattattgaaaactttgaaacatgtttctctcttcaaa |
37424693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 15155877 - 15155919
Alignment:
| Q |
53 |
gttccaattattgaatactttgaaacacgtttctctcttcaaa |
95 |
Q |
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| T |
15155877 |
gttccgattattgaaaactttgaaacatgtttctctcttcaaa |
15155919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 50521661 - 50521723
Alignment:
| Q |
97 |
aatttatccaacaatca-taaaaattagcgacgtaaataaatttgcaagtgaagtaaaaatta |
158 |
Q |
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| T |
50521661 |
aatttatcaaataatcaataaaaattagccatttaaacaaatttgcaagtgaagtaaaaatta |
50521723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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