View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14244_low_8 (Length: 273)
Name: NF14244_low_8
Description: NF14244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14244_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 6e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 20 - 249
Target Start/End: Complemental strand, 31077285 - 31077049
Alignment:
| Q |
20 |
gacacggcggtggaagttggcgtatatggaaaagacagaaccaatgatagggtaagctttgggaatggcggtggaggagggtgtttttgggaatttggat |
119 |
Q |
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| T |
31077285 |
gacacggcggtggaagttggcgtaaatggaaaagacagaaccaatgatagggtaagttttgggaatggcggtggaggagggtgttttttggaatttggat |
31077186 |
T |
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| Q |
120 |
tgnnnnnnngtggctaagaataggaaccaaacgagtgttgcaaagaagaataagaaagaaagcaaggtttcgagttccatttggacttgaatactta--- |
216 |
Q |
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| T |
31077185 |
tgttttttagtggctaagaataagaaccaaacgagtggtgctgagaaaagtaacaaagaaagcaaagtttcgagttccatttggacttgaatacttaaga |
31077086 |
T |
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| Q |
217 |
----gagccaatattgtgttgcttacattacttggtt |
249 |
Q |
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| T |
31077085 |
gtttgagccaatattgtgttgcttacattacttggtt |
31077049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 203
Target Start/End: Complemental strand, 31126551 - 31126420
Alignment:
| Q |
72 |
taagctttgggaatggcggtggaggagggtgtttttgggaatttggattgnnnnnnngtggctaagaataggaaccaaacgagtgttgcaaagaagaata |
171 |
Q |
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| T |
31126551 |
taaggtttgggaatggcggtggaggagtgtgtttttggggatattgatagttttgttttggctaagaataagaacgacacgagagttacagagtaaagta |
31126452 |
T |
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| Q |
172 |
agaaagaaagcaaggtttcgagttccatttgg |
203 |
Q |
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| T |
31126451 |
agaaagaaaccaatatttcgagttccatttgg |
31126420 |
T |
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