View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14245_high_18 (Length: 344)

Name: NF14245_high_18
Description: NF14245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14245_high_18
NF14245_high_18
[»] chr6 (22 HSPs)
chr6 (28-325)||(7993851-7994148)
chr6 (28-315)||(6594272-6594562)
chr6 (200-325)||(6589164-6589289)
chr6 (208-313)||(6426656-6426761)
chr6 (28-124)||(6602874-6602970)
chr6 (209-325)||(6416099-6416215)
chr6 (270-325)||(6402993-6403048)
chr6 (228-315)||(7119300-7119387)
chr6 (228-315)||(7131778-7131865)
chr6 (28-91)||(7131984-7132047)
chr6 (208-315)||(8913834-8913940)
chr6 (30-91)||(10579426-10579487)
chr6 (41-81)||(6423594-6423634)
chr6 (28-119)||(6410345-6410436)
chr6 (270-325)||(6585148-6585203)
chr6 (28-66)||(6432543-6432581)
chr6 (271-313)||(14820838-14820880)
chr6 (272-313)||(6395009-6395050)
chr6 (28-97)||(6426854-6426923)
chr6 (28-125)||(6596615-6596712)
chr6 (217-257)||(9411556-9411596)
chr6 (28-96)||(14821052-14821120)
[»] chr1 (13 HSPs)
chr1 (28-257)||(33160708-33160937)
chr1 (164-237)||(29658767-29658840)
chr1 (164-257)||(29691282-29691375)
chr1 (164-257)||(29718794-29718887)
chr1 (200-324)||(19468340-19468464)
chr1 (29-91)||(29658623-29658685)
chr1 (29-91)||(29691138-29691200)
chr1 (29-91)||(29718650-29718712)
chr1 (159-257)||(30827311-30827409)
chr1 (155-249)||(9586848-9586942)
chr1 (205-249)||(9581280-9581324)
chr1 (39-91)||(19468185-19468237)
chr1 (29-89)||(30827467-30827527)
[»] chr3 (3 HSPs)
chr3 (208-325)||(51764289-51764406)
chr3 (208-325)||(13470581-13470698)
chr3 (208-325)||(51113630-51113747)
[»] chr4 (4 HSPs)
chr4 (37-171)||(547203-547337)
chr4 (209-325)||(21834228-21834344)
chr4 (205-243)||(55908571-55908609)
chr4 (259-325)||(53761672-53761738)
[»] chr7 (4 HSPs)
chr7 (217-325)||(10614726-10614834)
chr7 (28-88)||(15091820-15091880)
chr7 (39-91)||(10169816-10169868)
chr7 (39-91)||(10177341-10177393)
[»] chr5 (1 HSPs)
chr5 (28-91)||(20477751-20477814)
[»] chr2 (1 HSPs)
chr2 (205-313)||(1037507-1037618)
[»] chr8 (1 HSPs)
chr8 (32-97)||(17627729-17627794)


Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-163; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 28 - 325
Target Start/End: Original strand, 7993851 - 7994148
Alignment:
Q  28 cacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggagtgtagagaatttc 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7993851 cacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggagtgtagagaatttc 7993950  T
Q  128 aatttcttgatggattttcctccaagccctcaattgaagtctctttgtttagctctctgtcaacagttgagagatgcaaacatcatattgtttgctacca 227  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7993951 aatttcttgacggattttcctccaagccctcaattgaagtctctttgtttagctctctgtcaacagttgagagatgcaaacatcatattgtttgctacca 7994050  T
Q  228 ttttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgttgtaagatcaggcatttg 325  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7994051 ttttcccaaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgttgtaagatcaggcatttg 7994148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 28 - 315
Target Start/End: Original strand, 6594272 - 6594562
Alignment:
Q  28 cacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggagtgtagagaatttc 127  Q
    |||||||||||| ||||||||||| |||||||  ||||| | |||| |||| ||||||||||| ||||||||| | ||||  | ||||| || || ||      
T  6594272 cacagaatcagctttgttttcacttgttagaagttgtcctttacttagtgatatcaaaatggagcgcacaaatatcgggaaggagagtgcagtgagttct 6594371  T
Q  128 aatttcttgatggattt---tcctccaagccctcaattgaagtctctttgtttagctctctgtcaacagttgagagatgcaaacatcatattgtttgcta 224  Q
    ||||  |||| ||||||   |  |  || |||||||||||||||||||||||| |||| |||| | || |||| ||||| |||||||||||||||||||     
T  6594372 aattctttgagggatttcgttgttgtaaaccctcaattgaagtctctttgtttggctcgctgtgagcacttgaaagatgaaaacatcatattgtttgctt 6594471  T
Q  225 ccattttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgttgtaagat 315  Q
    | |||||||||| |||| || |||| |||||||  | || | ||   |||||||||||||||||| | |||||||||| ||||| ||||||    
T  6594472 ctattttccccactttggagctgcttgatttgaggttttccgatcaaatatctgaaggtatttgtcaagttttaaggagatgttataagat 6594562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 325
Target Start/End: Original strand, 6589164 - 6589289
Alignment:
Q  200 gatgcaaacatcatattgtttgctaccattttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaa 299  Q
    |||||||| |||||| |||||||| ||||||||||||||||  || |||| ||||| |||||||| |||   |||||| ||||||||||| | || || |    
T  6589164 gatgcaaatatcataatgtttgcttccattttccccaatttagaggtgcttgatttcaattcttgtaataacatatctaaaggtatttgtcaagtattga 6589263  T
Q  300 ggaaatgttgtaagatcaggcatttg 325  Q
    | | |||||||||||| |||||||||    
T  6589264 gaagatgttgtaagattaggcatttg 6589289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 208 - 313
Target Start/End: Complemental strand, 6426761 - 6426656
Alignment:
Q  208 catcatattgtttgctaccattttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgt 307  Q
    ||||||| ||| |||| |||||||||||||||| ||| | || ||||||||   ||||  ||  |||||||||||||||||| | |||||||||||||||    
T  6426761 catcataatgtatgcttccattttccccaatttacagctacttgatttgaaggtttgccgtgaaatatctgaaggtatttgtgaagttttaaggaaatgt 6426662  T
Q  308 tgtaag 313  Q
    ||||||    
T  6426661 tgtaag 6426656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 124
Target Start/End: Original strand, 6602874 - 6602970
Alignment:
Q  28 cacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggagtgtagagaat 124  Q
    |||||||| | ||||||||||||| |||| ||||||||| |||||| |||| ||||||||||||  |||| || |||||| || || ||||||||||    
T  6602874 cacagaattatccttgttttcacttgttaaaaactgtccttcacttagtgagatcaaaatggaagacacagatattgggaaagagaatgtagagaat 6602970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 209 - 325
Target Start/End: Complemental strand, 6416215 - 6416099
Alignment:
Q  209 atcatattgtttgctaccattttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgtt 308  Q
    |||||| ||||| || |||  ||||||||||||||| |||| |||||||||  ||| |||    ||||||||||||||||| | ||||||| || |||||    
T  6416215 atcataatgttttcttccaacttccccaatttgcagctgcttgatttgaatcgttgtaatctcttatctgaaggtatttgtcaagttttaaagatatgtt 6416116  T
Q  309 gtaagatcaggcatttg 325  Q
    |||||||  ||||||||    
T  6416115 gtaagattgggcatttg 6416099  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 325
Target Start/End: Complemental strand, 6403048 - 6402993
Alignment:
Q  270 gtatatctgaaggtatttgttacgttttaaggaaatgttgtaagatcaggcatttg 325  Q
    |||||||||||||||||||| | |||||||||| ||||||||| || |||||||||    
T  6403048 gtatatctgaaggtatttgtcaagttttaaggagatgttgtaacattaggcatttg 6402993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 315
Target Start/End: Complemental strand, 7119387 - 7119300
Alignment:
Q  228 ttttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgttgtaagat 315  Q
    ||||||||||||| ||  | || ||||||||| ||||||||   |||||||||||||||||| | |||||||||| ||||| ||||||    
T  7119387 ttttccccaatttacaacttcttgatttgaatacttgcaataacatatctgaaggtatttgtcaagttttaaggagatgttctaagat 7119300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 315
Target Start/End: Complemental strand, 7131865 - 7131778
Alignment:
Q  228 ttttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgttgtaagat 315  Q
    ||||||||||||| ||  | || ||||||||| ||||||||   |||||||||||||||||| | |||||||||| ||||| ||||||    
T  7131865 ttttccccaatttacaacttcttgatttgaatacttgcaataacatatctgaaggtatttgtcaagttttaaggagatgttctaagat 7131778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 7132047 - 7131984
Alignment:
Q  28 cacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 91  Q
    |||||||| |||||||| |||||||||||||||||| || |||||| ||||  |||||||||||    
T  7132047 cacagaattagccttgtattcactcgttagaaactgcccttcacttagtgagttcaaaatggaa 7131984  T

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Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 315
Target Start/End: Original strand, 8913834 - 8913940
Alignment:
Q  208 catcatattgtttgctaccattttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgt 307  Q
    ||||||| |||||||| |||||||  |||||||||| ||||| ||||| |||| |||  ||  ||||||| ||||||||||| | |||||||| | ||||    
T  8913834 catcataatgtttgcttccattttttccaatttgcatatgcttgattt-aattattgagattatatatctaaaggtatttgtcaagttttaagaagatgt 8913932  T
Q  308 tgtaagat 315  Q
    ||||||||    
T  8913933 tgtaagat 8913940  T

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Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 10579426 - 10579487
Alignment:
Q  30 cagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 91  Q
    ||||||||||||||||||| ||||| ||||| ||||| || ||| |||| ||||||||||||    
T  10579426 cagaatcagccttgttttccctcgtaagaaattgtccttcgcttagtgagatcaaaatggaa 10579487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 6423634 - 6423594
Alignment:
Q  41 ttgttttcactcgttagaaactgtccatcacttcgtgaaat 81  Q
    |||||||||||||||||||||||||| |||||| |||||||    
T  6423634 ttgttttcactcgttagaaactgtccttcacttagtgaaat 6423594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 119
Target Start/End: Complemental strand, 6410436 - 6410345
Alignment:
Q  28 cacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggagtgtag 119  Q
    |||||||| ||||  |||||||||||||||||| ||||| ||||||  ||| ||||||||| || | |||| | |||||| || ||||||||    
T  6410436 cacagaattagcccagttttcactcgttagaaattgtccttcacttaatgagatcaaaatgaaaagaacaagtattgggaaagagagtgtag 6410345  T

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Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 325
Target Start/End: Original strand, 6585148 - 6585203
Alignment:
Q  270 gtatatctgaaggtatttgttacgttttaaggaaatgttgtaagatcaggcatttg 325  Q
    |||||||||||||||||||| | |||||||||| ||||| ||| || |||||||||    
T  6585148 gtatatctgaaggtatttgtcatgttttaaggagatgttttaatattaggcatttg 6585203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 6432581 - 6432543
Alignment:
Q  28 cacagaatcagccttgttttcactcgttagaaactgtcc 66  Q
    ||||||||||||| |||||||||||||| ||||||||||    
T  6432581 cacagaatcagccctgttttcactcgttggaaactgtcc 6432543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 313
Target Start/End: Complemental strand, 14820880 - 14820838
Alignment:
Q  271 tatatctgaaggtatttgttacgttttaaggaaatgttgtaag 313  Q
    ||||||||||||||||||| | | |||||||||||||||||||    
T  14820880 tatatctgaaggtatttgtcaaggtttaaggaaatgttgtaag 14820838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 313
Target Start/End: Complemental strand, 6395050 - 6395009
Alignment:
Q  272 atatctgaaggtatttgttacgttttaaggaaatgttgtaag 313  Q
    |||||||||||||||||| | ||||||| |||||||||||||    
T  6395050 atatctgaaggtatttgtcaagttttaaagaaatgttgtaag 6395009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 6426923 - 6426854
Alignment:
Q  28 cacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcaca 97  Q
    ||||||| || | ||||||||||| |||||||||||||| ||| || |||| || ||||||||| |||||    
T  6426923 cacagaaacaacattgttttcacttgttagaaactgtccttcaattagtgagattaaaatggaaggcaca 6426854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 6596615 - 6596712
Alignment:
Q  28 cacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggagtgtagagaatt 125  Q
    ||||||||||||| ||||||| ||||| ||||| ||||| || ||| |||| ||||||||| ||  ||||  | ||||||  | ||||||||||||||    
T  6596615 cacagaatcagccgtgttttccctcgtaagaaattgtccttcgcttagtgagatcaaaatgcaaaacacagctattgggacggagagtgtagagaatt 6596712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 9411596 - 9411556
Alignment:
Q  217 gtttgctaccattttccccaatttgcagatgctcgatttga 257  Q
    ||||||| |||||||||||||||||||| |||| |||||||    
T  9411596 gtttgcttccattttccccaatttgcagctgcttgatttga 9411556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 14821120 - 14821052
Alignment:
Q  28 cacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcac 96  Q
    ||||||| || ||||||||||||||||||| ||||||   ||||||  |||| ||||||||||| ||||    
T  14821120 cacagaaacaaccttgttttcactcgttaggaactgttattcacttattgaagtcaaaatggaatgcac 14821052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 28 - 257
Target Start/End: Complemental strand, 33160937 - 33160708
Alignment:
Q  28 cacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggagtgtagagaatttc 127  Q
    |||||||||||| ||||||||||| |||| ||||||||| |||||| |||| |||||||||||| |||||| | |||||| || |||| ||||| ||       
T  33160937 cacagaatcagcattgttttcacttgttacaaactgtccttcacttagtgacatcaaaatggaatgcacaactattgggaaagagagtatagagcatgat 33160838  T
Q  128 aatttcttgatggattttcctccaagccctcaattgaagtctctttgtttagctctctgtcaacagttgagagatgcaaacatcatattgtttgctacca 227  Q
    ||||  |||| ||| |||     |||||||||||| |||||||||| ||| ||   |||||| || |||||||||| ||||||| |||||||| ||  ||    
T  33160837 aattctttgacggactttgaagtaagccctcaattaaagtctctttctttggcggactgtcagcacttgagagatgaaaacatcgtattgtttcctttca 33160738  T
Q  228 ttttccccaatttgcagatgctcgatttga 257  Q
    | |||||||||||| || |||| |||||||    
T  33160737 tgttccccaatttggaggtgcttgatttga 33160708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 29658767 - 29658840
Alignment:
Q  164 aagtctctttgtttagctctctgtcaacagttgagagatgcaaacatcatattgtttgctaccattttccccaa 237  Q
    |||||||||||||| |||| ||||||| | |||||||||  ||||||||||||||||||| |||||||||||||    
T  29658767 aagtctctttgtttggctcgctgtcaatacttgagagatcaaaacatcatattgtttgcttccattttccccaa 29658840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 164 - 257
Target Start/End: Original strand, 29691282 - 29691375
Alignment:
Q  164 aagtctctttgtttagctctctgtcaacagttgagagatgcaaacatcatattgtttgctaccattttccccaatttgcagatgctcgatttga 257  Q
    |||||||||||||| |||| ||||||| | |||||||||  |||||| |||||||||||| ||||||||||||| ||| || |||| |||||||    
T  29691282 aagtctctttgtttggctcgctgtcaatacttgagagatcaaaacattatattgtttgcttccattttccccaacttggaggtgcttgatttga 29691375  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 164 - 257
Target Start/End: Original strand, 29718794 - 29718887
Alignment:
Q  164 aagtctctttgtttagctctctgtcaacagttgagagatgcaaacatcatattgtttgctaccattttccccaatttgcagatgctcgatttga 257  Q
    |||||||||||||| |||| ||||||| | |||||||||  |||||| |||||||||||| ||||||||||||| ||| || |||| |||||||    
T  29718794 aagtctctttgtttggctcgctgtcaatacttgagagatcaaaacattatattgtttgcttccattttccccaacttggaggtgcttgatttga 29718887  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 324
Target Start/End: Original strand, 19468340 - 19468464
Alignment:
Q  200 gatgcaaacatcatattgtttgctaccattttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaa 299  Q
    |||| |||||||||| |||||||| ||||||| |||||||||||| |||| |||||||| || |||||    ||||| ||||| |||||| | |||||||    
T  19468340 gatgaaaacatcataatgtttgcttccatttttcccaatttgcagctgcttgatttgaactcatgcaaccacatatcggaaggcatttgtcaagttttaa 19468439  T
Q  300 ggaaatgttgtaagatcaggcattt 324  Q
    |||  |||| ||| || ||||||||    
T  19468440 ggaggtgttctaatattaggcattt 19468464  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 29658623 - 29658685
Alignment:
Q  29 acagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 91  Q
    ||||||||||| |||||||| ||||||| ||| ||||| |||||| |||| ||||||||||||    
T  29658623 acagaatcagctttgttttcgctcgttataaattgtccttcacttagtgacatcaaaatggaa 29658685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 29691138 - 29691200
Alignment:
Q  29 acagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 91  Q
    ||||||||||| |||||||| ||||||| ||| ||||| |||||| |||| ||||||||||||    
T  29691138 acagaatcagctttgttttcgctcgttataaattgtccttcacttagtgacatcaaaatggaa 29691200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 29718650 - 29718712
Alignment:
Q  29 acagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 91  Q
    ||||||||||| |||||||| ||||||| ||| ||||| |||||| |||| ||||||||||||    
T  29718650 acagaatcagctttgttttcgctcgttataaattgtccttcacttagtgacatcaaaatggaa 29718712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 257
Target Start/End: Complemental strand, 30827409 - 30827311
Alignment:
Q  159 aattgaagtctctttgtttagctctctgtcaacagttgagagatgcaaacatcatattgtttgctaccattttccccaatttgcagatgctcgatttga 257  Q
    |||| |||||||||| ||| |||  |||| || | |||||||||| ||||||| |||||||| || | ||||||||||||||| || |||| |||||||    
T  30827409 aattaaagtctctttctttggctggctgttaatacttgagagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttga 30827311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 249
Target Start/End: Complemental strand, 9586942 - 9586848
Alignment:
Q  155 cctcaattgaagtctctttgtttagctctctgtcaacagttgagagatgcaaacatcatattgtttgctaccattttccccaatttgcagatgct 249  Q
    ||||||||||||||||||  ||| | || |  ||||  ||| ||||||  |||||||||| |||||||| | |||||||||||||||||| ||||    
T  9586942 cctcaattgaagtctcttgatttgggtcgcaatcaatggttaagagataaaaacatcataatgtttgcttcaattttccccaatttgcagctgct 9586848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 9581324 - 9581280
Alignment:
Q  205 aaacatcatattgtttgctaccattttccccaatttgcagatgct 249  Q
    |||||||||| |||||||| | |||||||||||||||||| ||||    
T  9581324 aaacatcataatgtttgcttcaattttccccaatttgcagctgct 9581280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 19468185 - 19468237
Alignment:
Q  39 ccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 91  Q
    |||||||| |||||||||| || ||||| |||||| |||| ||||||||||||    
T  19468185 ccttgtttacactcgttaggaattgtccttcacttagtgagatcaaaatggaa 19468237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 30827527 - 30827467
Alignment:
Q  29 acagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatgg 89  Q
    ||||||||||| |||||||| ||||||| ||| ||||| ||||||  ||| ||||||||||    
T  30827527 acagaatcagctttgttttcgctcgttacaaattgtccttcacttactgacatcaaaatgg 30827467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 208 - 325
Target Start/End: Original strand, 51764289 - 51764406
Alignment:
Q  208 catcatattgtttgctaccattttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgt 307  Q
    ||||||| |||||||| |||||||||||||||||||| |||| ||||| |||||||||||| | |||||| ||||| | ||| | |||||||||| ||||    
T  51764289 catcataatgtttgcttccattttccccaatttgcagctgcttgattttaattcttgcaatcgcatatctaaaggtgtctgtgaagttttaaggagatgt 51764388  T
Q  308 tgtaagatcaggcatttg 325  Q
    | |||||| |||||||||    
T  51764389 tctaagattaggcatttg 51764406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 208 - 325
Target Start/End: Original strand, 13470581 - 13470698
Alignment:
Q  208 catcatattgtttgctaccattttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgt 307  Q
    ||||||| |||||||| ||| |||||||||||||||| |||| |||||||||| |||||||    ||||  ||||||||||| | |||||||||| ||||    
T  13470581 catcataatgtttgcttccaatttccccaatttgcagctgcttgatttgaattgttgcaatctcttatcaaaaggtatttgtcaagttttaaggatatgt 13470680  T
Q  308 tgtaagatcaggcatttg 325  Q
    |||||||| |||||||||    
T  13470681 tgtaagattaggcatttg 13470698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 325
Target Start/End: Original strand, 51113630 - 51113747
Alignment:
Q  208 catcatattgtttgctaccattttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgt 307  Q
    ||||||| || ||||| |||||||||||||| ||||| | || ||||| | |  |||| |||  ||||| |||||||||||| | ||||||| || ||||    
T  51113630 catcataatgattgcttccattttccccaatctgcagcttcttgatttaactcattgctatgagatatccgaaggtatttgtcaagttttaaagagatgt 51113729  T
Q  308 tgtaagatcaggcatttg 325  Q
    ||||| || |||||||||    
T  51113730 tgtaaaattaggcatttg 51113747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 37 - 171
Target Start/End: Complemental strand, 547337 - 547203
Alignment:
Q  37 agccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggagtgtagagaatttcaatttcttg 136  Q
    |||||||||| |||||||||| || ||| | |||||| |||| ||||||||||||| ||||||  ||||||| | ||||||||||||||  ||||  ||     
T  547337 agccttgtttgcactcgttagtaattgtgcttcacttagtgagatcaaaatggaactcacaaaaattgggatggagagtgtagagaattctaattctttc 547238  T
Q  137 atggattttcctccaagccctcaattgaagtctct 171  Q
    | |||||||  |  |||||||||||||||||||||    
T  547237 aaggattttgttgtaagccctcaattgaagtctct 547203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 325
Target Start/End: Original strand, 21834228 - 21834344
Alignment:
Q  209 atcatattgtttgctaccattttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgtt 308  Q
    |||||| |||||||| | |||||||||||||| ||| |||| ||||||| ||||| ||     ||||| |||||||||||  | ||||||||||||||||    
T  21834228 atcataatgtttgcttcaattttccccaatttacagctgcttgatttgacttcttccacacagatatcagaaggtatttgcgaagttttaaggaaatgtt 21834327  T
Q  309 gtaagatcaggcatttg 325  Q
    ||||||| | |||||||    
T  21834328 gtaagattaagcatttg 21834344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 55908571 - 55908609
Alignment:
Q  205 aaacatcatattgtttgctaccattttccccaatttgca 243  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  55908571 aaacatcatattgtttgcttccattttccccaatttgca 55908609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 325
Target Start/End: Original strand, 53761672 - 53761738
Alignment:
Q  259 ttcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgttgtaagatcaggcatttg 325  Q
    ||||||| || | |||||| ||||||||||| | |||||||||| ||||||||| || |||||||||    
T  53761672 ttcttgcgatcgaatatctaaaggtatttgtcaagttttaaggagatgttgtaacattaggcatttg 53761738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 325
Target Start/End: Complemental strand, 10614834 - 10614726
Alignment:
Q  217 gtttgctaccattttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgttgtaagatc 316  Q
    ||||||| ||| |||||||||||||||  |||| |||||||||  |||||||    ||| ||||||||||||| | |||||||||| ||||||||||||     
T  10614834 gtttgcttccaatttccccaatttgcaactgcttgatttgaatcgttgcaatctcttatatgaaggtatttgtcaagttttaaggatatgttgtaagatt 10614735  T
Q  317 aggcatttg 325  Q
    |||||||||    
T  10614734 aggcatttg 10614726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 15091820 - 15091880
Alignment:
Q  28 cacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatg 88  Q
    ||||||| || ||||||||||||||| |||||||||||| || |||  |||||||||||||    
T  15091820 cacagaaacaaccttgttttcactcggtagaaactgtccttcgcttattgaaatcaaaatg 15091880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 10169816 - 10169868
Alignment:
Q  39 ccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 91  Q
    |||||||| |||||||||| || ||||| |||||| |||| ||||||||||||    
T  10169816 ccttgtttgcactcgttaggaattgtccttcacttagtgagatcaaaatggaa 10169868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 10177341 - 10177393
Alignment:
Q  39 ccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 91  Q
    |||||||| |||||||||| || ||||| |||||| |||| ||||||||||||    
T  10177341 ccttgtttgcactcgttaggaattgtccttcacttagtgagatcaaaatggaa 10177393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 20477751 - 20477814
Alignment:
Q  28 cacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 91  Q
    |||||||| |||||||| |||||| |||||||||||||| |||||| |||| ||||||||||||    
T  20477751 cacagaattagccttgtattcactagttagaaactgtccttcactttgtgagatcaaaatggaa 20477814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 313
Target Start/End: Original strand, 1037507 - 1037618
Alignment:
Q  205 aaacatcatattgtttgctaccattttccccaatttgcagatgctcgatttgaattcttgcaatggtatatct---gaaggtatttgttacgttttaagg 301  Q
    ||||||||||||||||||| |||||||||||||||||||  | || |||||||  || ||| ||   ||||||   |||||||||||| | |||||||||    
T  1037507 aaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttttaagg 1037606  T
Q  302 aaatgttgtaag 313  Q
    | ||||||||||    
T  1037607 agatgttgtaag 1037618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 17627729 - 17627794
Alignment:
Q  32 gaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcaca 97  Q
    |||||||||||||||||||||||||| || ||||| ||||||  ||| || ||||||||| |||||    
T  17627729 gaatcagccttgttttcactcgttagtaaatgtccttcacttaatgagataaaaatggaatgcaca 17627794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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