View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14245_high_20 (Length: 331)
Name: NF14245_high_20
Description: NF14245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14245_high_20 |
 | |
|
| [»] scaffold0069 (3 HSPs) |
| | |
|
| [»] scaffold0006 (3 HSPs) |
| | |
|
| [»] scaffold0238 (1 HSPs) |
| | |
|
| [»] scaffold0355 (2 HSPs) |
| | |
|
| [»] scaffold0402 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 20766274 - 20766022
Alignment:
| Q |
17 |
gaatttacttcgttgtcaaatttgagaagcttctgctatgggaaacaaacattcatattctcatctttgctcaatttcatcgttaaaggatgccctcaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20766274 |
gaatttacttcgttgtcaaatttgagaagcttctgctatgggaaacaaacattcatattcccatctttgctcagtttcatcgttaaaggatgccctcaaa |
20766175 |
T |
|
| Q |
117 |
tgaagatcttctcatctgcactcacagtagcaccgtgcctcacatcaattgaggtggaagaagaaaacatgcgatggaaaggtgatcttaacacaactat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
20766174 |
tgaagatcttctcatctgcactcacagtagcaccgtgcctcacatcaattgaggtggaagaagaaaacatgcgatgggaaggtgatcttaacacaactat |
20766075 |
T |
|
| Q |
217 |
tgaacaaatgttcatagaaaaggtacacaatgtcattattatttatgaaaatt |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20766074 |
tgaacaaatgttcatagaaaaggtacacaatgtcattattatttatgaaaatt |
20766022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 20765586 - 20765536
Alignment:
| Q |
264 |
aaaattatctaatgaaatataagaaagagaaattgtcttctatattgacgc |
314 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
20765586 |
aaaattatctaatgaaatatgagaaagagaaattgtcttctatattgacgc |
20765536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 60428 - 60680
Alignment:
| Q |
17 |
gaatttacttcgttgtcaaatttgagaagcttctgctatgggaaacaaacattcatattctcatctttgctcaatttcatcgttaaaggatgccctcaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
60428 |
gaatttacttcgttgtcaaatttgagaagcttctgctatgggaaacaaacattcatattcccatctttgctcagtttcatcgttaaaggatgccctcaaa |
60527 |
T |
|
| Q |
117 |
tgaagatcttctcatctgcactcacagtagcaccgtgcctcacatcaattgaggtggaagaagaaaacatgcgatggaaaggtgatcttaacacaactat |
216 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
60528 |
tgaagatcttctcatatgcactaacagtagcaccgtgcctcacatcaattaaggtggaagaagaaaacatgcgatggaaaggtgatcttaacacaactat |
60627 |
T |
|
| Q |
217 |
tgaacaaatgttcatagaaaaggtacacaatgtcattattatttatgaaaatt |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
60628 |
tgaacaaatgttcatagaaaaggtacacaatgtcattattatttatgaaaatt |
60680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 45332 - 45465
Alignment:
| Q |
17 |
gaatttacttcgttgtcaaatttgagaagcttctgctatgggaaacaaacattcatattctcatctttgctcaatttcatcgttaaaggatgccctcaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
45332 |
gaatttacttcgttgtcaaatttgagaagcttctgctatgggaaacaaacattcatattcccatctttgcttcgtttcatctttaaaggatgccctcaaa |
45431 |
T |
|
| Q |
117 |
tgaagatcttctcatctgcactcacagtagcacc |
150 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
|
|
| T |
45432 |
tgaagatcttctcatctgcactcatagtagcacc |
45465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 264 - 319
Target Start/End: Original strand, 61140 - 61195
Alignment:
| Q |
264 |
aaaattatctaatgaaatataagaaagagaaattgtcttctatattgacgcagaat |
319 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||||||||||| |||| |
|
|
| T |
61140 |
aaaattatctaatgaaatctgagaaagagaaattgtcttctatattgacgcggaat |
61195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 17)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 20380639 - 20380891
Alignment:
| Q |
17 |
gaatttacttcgttgtcaaatttgagaagcttctgctatgggaaacaaacattcatattctcatctttgctcaatttcatcgttaaaggatgccctcaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20380639 |
gaatttacttcgttgtcaaatttgagaagcttctgctatgggaaacaaacattcatattcccatctttgctcagtttcatcgttaaaggatgccctcaaa |
20380738 |
T |
|
| Q |
117 |
tgaagatcttctcatctgcactcacagtagcaccgtgcctcacatcaattgaggtggaagaagaaaacatgcgatggaaaggtgatcttaacacaactat |
216 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20380739 |
tgaagatcttctcatgtgcactgacagtagcaccgtgcctcacatcaattaaggtggaagaagaaaacatgcgatggaaaggtgatcttaacacaactat |
20380838 |
T |
|
| Q |
217 |
tgaacaaatgttcatagaaaaggtacacaatgtcattattatttatgaaaatt |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20380839 |
tgaacaaatgttcatagaaaaggtacacaatgtcattattatttatgaaaatt |
20380891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 24 - 269
Target Start/End: Original strand, 13689456 - 13689701
Alignment:
| Q |
24 |
cttcgttgtcaaatttgagaagcttctgctatgggaaacaaacattcatattctcatctttgctcaatttcatcgttaaaggatgccctcaaatgaagat |
123 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||| ||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13689456 |
cttctttgtcaagtttgagaagcttctgctatgggaaacaagcattcatattcccatatttgctttgtttcatcgttaaaggatgccctcaaatgaagat |
13689555 |
T |
|
| Q |
124 |
cttctcatctgcactcacagtagcaccgtgcctcacatcaattgaggtggaagaagaaaacatgcgatggaaaggtgatcttaacacaactattgaacaa |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13689556 |
cttctcatctgcactcacagtagcaccgtgcctcacatcaattgaggtggaaaaagaaaatatgcgatggaaaggtgatcttaacacaactattgaacaa |
13689655 |
T |
|
| Q |
224 |
atgttcatagaaaaggtacacaatgtcattattatttatgaaaatt |
269 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13689656 |
atgttcaaagaaaaggtacacaatgtcattattatttatgaaaatt |
13689701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 13439304 - 13439555
Alignment:
| Q |
18 |
aatttacttcgttgtcaaatttgagaagcttctgctatgggaaacaaacattcatattctcatctttgctcaatttcatcgttaaaggatgccctcaaat |
117 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||| ||||||||||| |||||||| |
|
|
| T |
13439304 |
aatttacttcgttgtcaagtttgagaagcttcttctatgggaaacaaacattcatattcccatctttgctttttttcattgttaaaggatgtcctcaaat |
13439403 |
T |
|
| Q |
118 |
gaagatcttctcatctgcactcacagtagcaccgtgcctcacatcaattgaggtggaagaagaaaacatgcgatggaaaggtgatcttaacacaactatt |
217 |
Q |
| |
|
||||||||||||||||||||| | ||||||||| | |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13439404 |
gaagatcttctcatctgcactaatagtagcaccatacctcgcaacaattgaggtggaagaagaaaacatgcgatggaaaggtgatcttaacacaactatt |
13439503 |
T |
|
| Q |
218 |
gaacaaatgttcatagaaaaggtacacaatgtcattattatttatgaaaatt |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
13439504 |
gaacaaatgttcatagaaaaggtacacaatatcattattatttatgaaaatt |
13439555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 13615001 - 13615253
Alignment:
| Q |
17 |
gaatttacttcgttgtcaaatttgagaagcttctgctatgggaaacaaacattcatattctcatctttgctcaatttcatcgttaaaggatgccctcaaa |
116 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||| || |
|
|
| T |
13615001 |
gaatttacttcattgtcaagtttgagaagcttctgctatgggaaacaaacattcatattcccatctttgcttcgtttcatctttaaaggatgccctcgaa |
13615100 |
T |
|
| Q |
117 |
tgaagatcttctcatctgcactcacagtagcaccgtgcctcacatcaattgaggtggaagaagaaaacatgcgatggaaaggtgatcttaacacaactat |
216 |
Q |
| |
|
|||| |||||||||| ||||||||||||| |||||| ||||||| |||||| |||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
13615101 |
tgaaaatcttctcatttgcactcacagtaacaccgtacctcacaaaaattgatgtgggagaagaaaacatgcgatggaaaggtgatcttaacaaaactat |
13615200 |
T |
|
| Q |
217 |
tgaacaaatgttcatagaaaaggtacacaatgtcattattatttatgaaaatt |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13615201 |
tgaacaaatgttcatagaaaaggtacacaatgtcattattatttatgaaaatt |
13615253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 21 - 269
Target Start/End: Complemental strand, 20507961 - 20507713
Alignment:
| Q |
21 |
ttacttcgttgtcaaatttgagaagcttctgctatgggaaacaaacattcatattctcatctttgctcaatttcatcgttaaaggatgccctcaaatgaa |
120 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||| | ||||||||||||| ||| ||||||||||| |
|
|
| T |
20507961 |
ttacttctttgtcaagtttgagaagcttctgctatgggaaacaagcattcatattcccatctttgctacacttcatcgttaaagaatgtcctcaaatgaa |
20507862 |
T |
|
| Q |
121 |
gatcttctcatctgcactcacagtagcaccgtgcctcacatcaattgaggtggaagaagaaaacatgcgatggaaaggtgatcttaacacaactattgaa |
220 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| || |
|
|
| T |
20507861 |
gatcttctcatctgcacccacagcagcaccgtgcctcacaacaattgaggtggaagaagaaaatatgcgatggaaaggtgatcttaacaaaactattcaa |
20507762 |
T |
|
| Q |
221 |
caaatgttcatagaaaaggtacacaatgtcattattatttatgaaaatt |
269 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20507761 |
caaattttcatagaaaaggtacacaatgtcattattatttatgaaaatt |
20507713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 19133802 - 19133572
Alignment:
| Q |
17 |
gaatttacttcgttgtcaaatttgagaagcttctgctatgggaaacaaacattcatattctcatctttgctcaatttcatcgttaaaggatgccctcaaa |
116 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19133802 |
gaatttacttcgttgtcaagtttaagaagcttctgctatgggaaacaaacattcatattcccatctttgctcagtttcatcgttaaaggatgccctcaaa |
19133703 |
T |
|
| Q |
117 |
tgaagatcttctcatctgcactcacagtagcaccgtgcctcacatcaattgaggtggaagaagaaaacatgcgatggaaaggtgatcttaacacaactat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |||| | |||| |||| |||| ||||||||||||||||||||||||||||| || |
|
|
| T |
19133702 |
tgaagatcttctcatctgcactcacagtagcaccatgcctcacaaaaattaacgtgggagaaaaaaatatgcgatggaaaggtgatcttaacacaacgat |
19133603 |
T |
|
| Q |
217 |
tgaacaaatgttcatagaaaaggtacacaat |
247 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |
|
|
| T |
19133602 |
tgaacaaatgttcaaagaaaaggtacacaat |
19133572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 15893389 - 15893137
Alignment:
| Q |
17 |
gaatttacttcgttgtcaaatttgagaagcttctgctatgggaaacaaacattcatattctcatctttgctcaatttcatcgttaaaggatgccctcaaa |
116 |
Q |
| |
|
|||||||||| |||| ||| |||||||||||||||||||||||||||| ||||||||||| ||| |||||||| |||||| |||| |||||| ||||||| |
|
|
| T |
15893389 |
gaatttactttgttgccaagtttgagaagcttctgctatgggaaacaagcattcatattcccatttttgctcagtttcattgttataggatgtcctcaaa |
15893290 |
T |
|
| Q |
117 |
tgaagatcttctcatctgcactcacagtagcaccgtgcctcacatcaattgaggtggaagaagaaaacatgcgatggaaaggtgatcttaacacaactat |
216 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||| |||| | |||| ||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
15893289 |
tgaagatcttctcatttgcactcacagtagcaccgtacctcacaacaatcaatgtgggagaagaaaatatgctatggaaaggtgatcttaacacaactat |
15893190 |
T |
|
| Q |
217 |
tgaacaaatgttcatagaaaaggtacacaatgtcattattatttatgaaaatt |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
15893189 |
tgaacaaatgttcatagaaaaggtacacaacgtcattattatttatgaaaatt |
15893137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 13519923 - 13520153
Alignment:
| Q |
17 |
gaatttacttcgttgtcaaatttgagaagcttctgctatgggaaacaaacattcatattctcatctttgctcaatttcatcgttaaaggatgccctcaaa |
116 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||| | ||| |||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13519923 |
gaatttacttcattgtcaagtttgagaagcttctgttgtggtaaacaagcattcatattcccatctttgctcagtttcatcgttaaaggatgccctcaaa |
13520022 |
T |
|
| Q |
117 |
tgaagatcttctcatctgcactcacagtagcaccgtgcctcacatcaattgaggtggaagaagaaaacatgcgatggaaaggtgatcttaacacaactat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |||| | |||| |||| |||| ||||||||||||||||||||||||| ||| || |
|
|
| T |
13520023 |
tgaagatcttctcatctgcactcacagtagcaccatgcctcacaaaaattaacgtgggagaaaaaaatatgcgatggaaaggtgatcttaacataacgat |
13520122 |
T |
|
| Q |
217 |
tgaacaaatgttcatagaaaaggtacacaat |
247 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |
|
|
| T |
13520123 |
tgaacaaatgttcaaagaaaaggtacacaat |
13520153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 13555289 - 13555432
Alignment:
| Q |
17 |
gaatttacttcgttgtcaaatttgagaagcttctgctatgggaaacaaacattcatattctcatctttgctcaatttcatcgttaaaggatgccctcaaa |
116 |
Q |
| |
|
|||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
13555289 |
gaatttacttcgctgtcaagtttaagaagcttctgctatgggaaacaaacattcatatttccatctttgcttcgtttcatcgttaaaggatgtcctcaaa |
13555388 |
T |
|
| Q |
117 |
tgaagatcttctcatctgcactcacagtagcaccgtgcctcaca |
160 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
13555389 |
tgaagatcttctcatcttcactcacagtagcaccatgcctcaca |
13555432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 16445925 - 16445690
Alignment:
| Q |
18 |
aatttacttcgttgtcaaatttgagaagcttctgctatgggaaacaaacattcatattctcatctttgctcaatttcatcgttaaaggatgccctcaaat |
117 |
Q |
| |
|
|||||| ||| || |||| |||||||||||||||||||| ||||||| ||||||||||| |||||||||| ||| ||||||||||||| |||||||| |
|
|
| T |
16445925 |
aatttatttctttatcaagtttgagaagcttctgctatgagaaacaagcattcatattcccatctttgctacgttttgtcgttaaaggatgtcctcaaat |
16445826 |
T |
|
| Q |
118 |
gaagatcttctcatctgcactcacagtagcaccgtgcctcacatcaattgaggtggaagaagaaaacatgcgatggaaaggtgatcttaacacaactatt |
217 |
Q |
| |
|
|||||| |||||||| | | |||| |||||||| | || ||| |||||| || |||| ||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
16445825 |
gaagattttctcatcaggagtcactgtagcaccatatctgacaagaattgaaacagatgaaggaaagatgcgatggaaaggtgatcttaatacaactatt |
16445726 |
T |
|
| Q |
218 |
gaacaaatgttcatagaaaaggtacacaatgtcatt |
253 |
Q |
| |
|
||| || ||||||| ||||||||||||||||||||| |
|
|
| T |
16445725 |
gaagaattgttcattgaaaaggtacacaatgtcatt |
16445690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 24 - 230
Target Start/End: Complemental strand, 19332730 - 19332524
Alignment:
| Q |
24 |
cttcgttgtcaaatttgagaagcttctgctatgggaaacaaacattcatattctcatctttgctcaatttcatcgttaaaggatgccctcaaatgaagat |
123 |
Q |
| |
|
|||| |||| || |||| |||| |||||| ||||||||||| ||||||||||| ||||||| || || | | ||||||||||| |||||||||||||| |
|
|
| T |
19332730 |
cttctttgttaagtttgcgaagtttctgcaatgggaaacaagcattcatattcccatctttactagatgttgttgttaaaggatgtcctcaaatgaagat |
19332631 |
T |
|
| Q |
124 |
cttctcatctgcactcacagtagcaccgtgcctcacatcaattgaggtggaagaagaaaacatgcgatggaaaggtgatcttaacacaactattgaacaa |
223 |
Q |
| |
|
|||||||| | | ||||||||||||| | ||| | | || |||| |||||| | ||||| | || ||||||| ||||||||| || |||||||||||| |
|
|
| T |
19332630 |
tttctcatcaggattcacagtagcaccattcctgatagcagttgaagtggaaaacgaaaagaaacggtggaaagatgatcttaataccactattgaacaa |
19332531 |
T |
|
| Q |
224 |
atgttca |
230 |
Q |
| |
|
|||||| |
|
|
| T |
19332530 |
ttgttca |
19332524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 204 - 266
Target Start/End: Original strand, 13555460 - 13555522
Alignment:
| Q |
204 |
ttaacacaactattgaacaaatgttcatagaaaaggtacacaatgtcattattatttatgaaa |
266 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
13555460 |
ttaacacaattattgaacaaatgttcatagaaaaggtacatagtgtcattattatttatgaaa |
13555522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 16493173 - 16493106
Alignment:
| Q |
175 |
agaagaaaacatgcgatggaaaggtgatcttaacacaactattgaacaaatgttcatagaaaaggtac |
242 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||| | ||| |||||| |
|
|
| T |
16493173 |
agaagaaaatatgcgatggaaagatgatcttaacacaactattgaacaattgttcgtggaacaggtac |
16493106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 264 - 319
Target Start/End: Original strand, 20381351 - 20381406
Alignment:
| Q |
264 |
aaaattatctaatgaaatataagaaagagaaattgtcttctatattgacgcagaat |
319 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||||||||||| |||| |
|
|
| T |
20381351 |
aaaattatctaatgaaatctgagaaagagaaattgtcttctatattgacgcggaat |
20381406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 245
Target Start/End: Complemental strand, 19341147 - 19341093
Alignment:
| Q |
191 |
tggaaaggtgatcttaacacaactattgaacaaatgttcatagaaaaggtacaca |
245 |
Q |
| |
|
||||||| |||||||||||| ||||||||||| |||||||||| |||||||||| |
|
|
| T |
19341147 |
tggaaagatgatcttaacaccactattgaacagctgttcatagagaaggtacaca |
19341093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 19341307 - 19341212
Alignment:
| Q |
37 |
tttgagaagcttctgctatgggaaacaaacattcatattctcatctttgctcaatttcatcgttaaaggatgccctcaaatgaagatcttctcatc |
132 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||| | || ||||| |||| | ||| ||||||| ||||| ||||||| |||||||| |
|
|
| T |
19341307 |
tttgggaagcttctgcaatgggaaacaaacattcatatttccgtcgttgctgcattttgttgttcaaggatgtcctcagttgaagattttctcatc |
19341212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 150
Target Start/End: Complemental strand, 16493317 - 16493204
Alignment:
| Q |
37 |
tttgagaagcttctgctatgggaaacaaacattcatattctcatctttgctcaatttcatcgttaaaggatgccctcaaatgaagatcttctcatctgca |
136 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| || ||| |||| ||| | |||| | ||| || |||||||| ||||||||| ||| |||| | | |
|
|
| T |
16493317 |
tttgagaagcttctgctatggaaaacaaacatttatcttcccatcattgatatgtttccttgttgaaaaatgccctcgaatgaagatattcacatcagga |
16493218 |
T |
|
| Q |
137 |
ctcacagtagcacc |
150 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
16493217 |
gtcacaatagcacc |
16493204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 177778 - 178030
Alignment:
| Q |
17 |
gaatttacttcgttgtcaaatttgagaagcttctgctatgggaaacaaacattcatattctcatctttgctcaatttcatcgttaaaggatgccctcaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||| |||||||||||||||||| |
|
|
| T |
177778 |
gaatttacttcgttgtcaaatttgagaagcttctgctatgggaaacaaacattcatattcccatctttactccgtttcatctttaaaggatgccctcaaa |
177877 |
T |
|
| Q |
117 |
tgaagatcttctcatctgcactcacagtagcaccgtgcctcacatcaattgaggtggaagaagaaaacatgcgatggaaaggtgatcttaacacaactat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
177878 |
tgaagatcttctcatctgcactcacagtagcaccatgcctcacatcaattgaggtggaagaagaaaacatgcgatggaaaggtgatcttaacacaactat |
177977 |
T |
|
| Q |
217 |
tgaacaaatgttcatagaaaaggtacacaatgtcattattatttatgaaaatt |
269 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
177978 |
tgaacagatgttcatagaaaaggtacacaatgccattattatttatgaaaatt |
178030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 21 - 258
Target Start/End: Original strand, 62248 - 62485
Alignment:
| Q |
21 |
ttacttcgttgtcaaatttgagaagcttctgctatgggaaacaaacattcatattctcatctttgctcaatttcatcgttaaaggatgccctcaaatgaa |
120 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||| |||||| ||||||||||| ||||||||||| |
|
|
| T |
62248 |
ttacttctttgtcaagtttgagaagcttctgctatgggaaacaagtattcatattcccatctttgctttttttcattgttaaaggatgtcctcaaatgaa |
62347 |
T |
|
| Q |
121 |
gatcttctcatctgcactcacagtagcaccgtgcctcacatcaattgaggtggaagaagaaaacatgcgatggaaaggtgatcttaacacaactattgaa |
220 |
Q |
| |
|
|| |||||||| | ||||||| ||||| | ||| ||| |||| | || |||||| | || |||| |||||||||||| |||||||||||||||||| |
|
|
| T |
62348 |
gagattctcatcacaagtcacagtggcaccatacctgacacgaattcaagttgaagaaaataatatgctatggaaaggtgaccttaacacaactattgaa |
62447 |
T |
|
| Q |
221 |
caaatgttcatagaaaaggtacacaatgtcattattat |
258 |
Q |
| |
|
||| | |||||||| |||||||| ||| ||||| |||| |
|
|
| T |
62448 |
caactcttcatagataaggtacataatatcattgttat |
62485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 319
Target Start/End: Original strand, 178484 - 178539
Alignment:
| Q |
264 |
aaaattatctaatgaaatataagaaagagaaattgtcttctatattgacgcagaat |
319 |
Q |
| |
|
||||||||||||| |||||| ||| |||||||||||||||||| |||| |||||| |
|
|
| T |
178484 |
aaaattatctaatcaaatatgagattgagaaattgtcttctataatgacacagaat |
178539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0238 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: scaffold0238
Description:
Target: scaffold0238; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 29 - 269
Target Start/End: Complemental strand, 26035 - 25795
Alignment:
| Q |
29 |
ttgtcaaatttgagaagcttctgctatgggaaacaaacattcatattctcatctttgctcaatttcatcgttaaaggatgccctcaaatgaagatcttct |
128 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||| ||||||||||| |||||||| | ||| || ||||||||||| ||||||||||||||||||| |
|
|
| T |
26035 |
ttgtcaagtttgagaagcttctactatgggaaacaagcattcatattcccatctttgtttttttttattgttaaaggatgtcctcaaatgaagatcttct |
25936 |
T |
|
| Q |
129 |
catctgcactcacagtagcaccgtgcctcacatcaattgaggtggaagaagaaaacatgcgatggaaaggtgatcttaacacaactattgaacaaatgtt |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| || | ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25935 |
catctgcactcacagtagcaccgtgcctcacagaaattgatgttggagaagaaaatatgcgatggaaaggtgatcttaacacaactattgaacaaatgtt |
25836 |
T |
|
| Q |
229 |
catagaaaaggtacacaatgtcattattatttatgaaaatt |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25835 |
catagaaaaggtacacaatgtcattattatttatgaaaatt |
25795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 22270893 - 22270641
Alignment:
| Q |
17 |
gaatttacttcgttgtcaaatttgagaagcttctgctatgggaaacaaacattcatattctcatctttgctcaatttcatcgttaaaggatgccctcaaa |
116 |
Q |
| |
|
||||| ||||| |||||| ||||||||||||||||| |||||||||| || || ||||| |||| ||||| | ||| | ||||||||||||||||||| |
|
|
| T |
22270893 |
gaattaacttcattgtcatgtttgagaagcttctgctgtgggaaacaagcaatcgtattcccatcgttgctagacttcgttgttaaaggatgccctcaaa |
22270794 |
T |
|
| Q |
117 |
tgaagatcttctcatctgcactcacagtagcaccgtgcctcacatcaattgaggtggaagaagaaaacatgcgatggaaaggtgatcttaacacaactat |
216 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22270793 |
tgaaaatcttctcatctgcactcacagtagcaccgtgtctcacatcaattgaggtggaagaagaaaacatgcgatggaaaggtgatcttaacacaactat |
22270694 |
T |
|
| Q |
217 |
tgaacaaatgttcatagaaaaggtacacaatgtcattattatttatgaaaatt |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |||| |||| |
|
|
| T |
22270693 |
tgaacaaatgttcatagaaaaggtacacaatgtcgttattattgatgagaatt |
22270641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 38048732 - 38048502
Alignment:
| Q |
17 |
gaatttacttcgttgtcaaatttgagaagcttctgctatgggaaacaaacattcatattctcatctttgctcaatttcatcgttaaaggatgccctcaaa |
116 |
Q |
| |
|
|||||| ||||| |||||| |||||||||||||||||||||||||||| ||||||| ||| |||||||| || ||||||||||| |||||| |||||| |
|
|
| T |
38048732 |
gaattttcttcgctgtcaagtttgagaagcttctgctatgggaaacaagcattcattttcccatctttgtacagtttcatcgttataggatgttctcaaa |
38048633 |
T |
|
| Q |
117 |
tgaagatcttctcatctgcactcacagtagcaccgtgcctcacatcaattgaggtggaagaagaaaacatgcgatggaaaggtgatcttaacacaactat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||| |||| | ||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38048632 |
tgaagatcttctcatctgcactcacagtagcaccatgcgtcacaaaaattaatatgggagaagaaaatatgcgatggaaaggtgatcttaacacaactat |
38048533 |
T |
|
| Q |
217 |
tgaacaaatgttcatagaaaaggtacacaat |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
38048532 |
tgaacaaatgttcatagaaaaggtacacaat |
38048502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0355 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: scaffold0355
Description:
Target: scaffold0355; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 147 - 269
Target Start/End: Original strand, 2307 - 2429
Alignment:
| Q |
147 |
caccgtgcctcacatcaattgaggtggaagaagaaaacatgcgatggaaaggtgatcttaacacaactattgaacaaatgttcatagaaaaggtacacaa |
246 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2307 |
caccatgcctcacatcaattgaggtggaagaagaaaacatgcaatggaaaggtgatcttaacacaactattgaacagatgttcatagaaaaggtacacaa |
2406 |
T |
|
| Q |
247 |
tgtcattattatttatgaaaatt |
269 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
2407 |
tgccattattatttatgaaaatt |
2429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0355; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 264 - 319
Target Start/End: Original strand, 2888 - 2943
Alignment:
| Q |
264 |
aaaattatctaatgaaatataagaaagagaaattgtcttctatattgacgcagaat |
319 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
2888 |
aaaattatctaatgaaatatgagaaagagaaattgtcttctatattgacgcggaat |
2943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0402 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0402
Description:
Target: scaffold0402; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 245
Target Start/End: Complemental strand, 4210 - 4156
Alignment:
| Q |
191 |
tggaaaggtgatcttaacacaactattgaacaaatgttcatagaaaaggtacaca |
245 |
Q |
| |
|
||||||| |||||||||||| ||||||||||| |||||||||| |||||||||| |
|
|
| T |
4210 |
tggaaagatgatcttaacaccactattgaacagctgttcatagagaaggtacaca |
4156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0402; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 4370 - 4275
Alignment:
| Q |
37 |
tttgagaagcttctgctatgggaaacaaacattcatattctcatctttgctcaatttcatcgttaaaggatgccctcaaatgaagatcttctcatc |
132 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||| | || ||||| |||| | ||| ||||||| ||||| ||||||| |||||||| |
|
|
| T |
4370 |
tttgggaagcttctgcaatgggaaacaaacattcatatttccgtcgttgctgcattttgttgttcaaggatgtcctcagttgaagattttctcatc |
4275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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