View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14245_high_3 (Length: 717)

Name: NF14245_high_3
Description: NF14245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14245_high_3
NF14245_high_3
[»] chr2 (1 HSPs)
chr2 (12-697)||(40998026-40998716)


Alignment Details
Target: chr2 (Bit Score: 601; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 12 - 697
Target Start/End: Original strand, 40998026 - 40998716
Alignment:
Q  12 atcatcacaatgtgtcggtgcaacatttacaaaattcggtccaacttacttaactagctcaatcctggatttttactggtttaaacgattttagtttggt 111  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  40998026 atcatcacaatgtgtaggtgcaacatttacaaaattcggtccaacttacttaactagctcaatcgtggattttgactggtttaaacgattttagtttggt 40998125  T
Q  112 tttt-ctca-gttcttttgttaccttgctatcgtctatttatgtagaaaaagttacttttattacctctatagttttaacaattctactaaatgcataga 209  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  40998126 tttttctcaagttcttttgttaccttgctatcgtctatttatgtagaaaaagttatttttattacctctatagttttaacaattctactaaatgcataga 40998225  T
Q  210 catatcatcacttagattgatcaattcgatcttattttcattaccttgctattgtctatttatcgtgattcaaacacaccatggcaaacaactctcttcc 309  Q
    || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40998226 cagatcatcacttagattgatcaattcgatcttatttttattaccttgctattgtctatttatcgtgattcaaacacaccatggcaaacaactctcttcc 40998325  T
Q  310 cccactctcaaccctcgccgtccccatttgaaaactcccataatcaagtgtttggcaagctaattcaattttacggaagtga---cacattttgaaaact 406  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||| ||||   |||||||||||||||    
T  40998326 cccactctcaaccctcgccgtccccatttgaaaactcccataattaagtgtttggtatgctaattcaattttacggaggtgatgacacattttgaaaact 40998425  T
Q  407 taagttgacccaagggccaagagccaagcaatccatccaagactcaaattcatcatatttgtatggacgaaaaacacattttaacctttttataattata 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  40998426 taagttgacccaagggccaagagccaagcaatccatccaagactcaaactcatcatatttgtaaggaccaaaaacacattttaacctttttataattata 40998525  T
Q  507 cacaacacacccctattggtggtttgggcatctagcaaatatagtttgagtagacagatcaatttacacaaaagattatataattggctccactacttac 606  Q
    || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40998526 cagaacgcacccctattggtggtttgggcatctagcaaatatagtttgagtagacagatcaatttacacaaaagattatataattggctccactacttac 40998625  T
Q  607 gctctgtttgggtataataatgattgaaatctggaaatcacatctagagatgagaaatttatctcaatgacagcaataacaagcacgtaga 697  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40998626 gctctgtttgggtataataatgattgaaatctggaaatcacatctagagatgagaaatttatctcaatgacagcaataacaagcacgtaga 40998716  T

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